This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5yip

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:31, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of AnkG LIR/GABARAPL1 complex==
==Crystal Structure of AnkG LIR/GABARAPL1 complex==
-
<StructureSection load='5yip' size='340' side='right' caption='[[5yip]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+
<StructureSection load='5yip' size='340' side='right'caption='[[5yip]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5yip]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Buffalo_rat Buffalo rat] and [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YIP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YIP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5yip]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YIP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YIP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Gabarapl1, Apg8l, Atg8l, Gec1, MNCb-0091 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice]), Ank3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10116 Buffalo rat])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yip OCA], [http://pdbe.org/5yip PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yip RCSB], [http://www.ebi.ac.uk/pdbsum/5yip PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yip ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yip FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yip OCA], [https://pdbe.org/5yip PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yip RCSB], [https://www.ebi.ac.uk/pdbsum/5yip PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yip ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/GBRL1_MOUSE GBRL1_MOUSE]] Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity). [[http://www.uniprot.org/uniprot/ANK3_RAT ANK3_RAT]] Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments. In skeletal muscle, required for costamere localization of DMD and betaDAG1 (By similarity). Regulates KCNA1 channel activity in function of dietary Mg(2+) levels, and thereby contributes to the regulation of renal Mg(2+) reabsorption (By similarity).[UniProtKB:G5E8K5]
+
[https://www.uniprot.org/uniprot/GBRL1_MOUSE GBRL1_MOUSE] Ubiquitin-like modifier that increases cell-surface expression of kappa-type opioid receptor through facilitating anterograde intracellular trafficking of the receptor. Involved in formation of autophagosomal vacuoles. Whereas LC3s are involved in elongation of the phagophore membrane, the GABARAP/GATE-16 subfamily is essential for a later stage in autophagosome maturation (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 19: Line 19:
</div>
</div>
<div class="pdbe-citations 5yip" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5yip" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ankyrin 3D structures|Ankyrin 3D structures]]
 +
*[[GABA receptor-associated protein 3D structures|GABA receptor-associated protein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Buffalo rat]]
+
[[Category: Large Structures]]
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Mus musculus]]
-
[[Category: Chen, K]]
+
[[Category: Rattus norvegicus]]
-
[[Category: Li, J]]
+
[[Category: Chen K]]
-
[[Category: Wang, C]]
+
[[Category: Li J]]
-
[[Category: Yuan, C]]
+
[[Category: Wang C]]
-
[[Category: Zhang, H]]
+
[[Category: Yuan C]]
-
[[Category: Zhang, M]]
+
[[Category: Zhang H]]
-
[[Category: Zheng, H]]
+
[[Category: Zhang M]]
-
[[Category: Zhu, R]]
+
[[Category: Zheng H]]
-
[[Category: Autophagy]]
+
[[Category: Zhu R]]
-
[[Category: Signaling protein]]
+

Current revision

Crystal Structure of AnkG LIR/GABARAPL1 complex

PDB ID 5yip

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5yip"
Personal tools