Dihedral/Index
From Proteopedia
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** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]]) | ||
** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation): | ** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation): | ||
| - | *** [http://tinyurl.com/RamachandranPrinciple slideshow] in English | + | *** [http://tinyurl.com/RamachandranPrinciple slideshow] in English including explanation of dihedral angles with animated illustration |
*** [http://tinyurl.com/PrincipioRamachandran slideshow] in Spanish | *** [http://tinyurl.com/PrincipioRamachandran slideshow] in Spanish | ||
| - | ** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English). | + | ** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration. |
** A '''quiz''' to self-assess understanding of the tutorial or the slideshow: | ** A '''quiz''' to self-assess understanding of the tutorial or the slideshow: | ||
*** [[Dihedral/Ramachandran_Principle_Quiz|quiz in English]] | *** [[Dihedral/Ramachandran_Principle_Quiz|quiz in English]] | ||
Revision as of 21:13, 11 July 2018
Dihedral angles in proteins and the Ramachandran plot
This in an index page pointing to several resources on these topics.
- Definition of phi and psi, in English and Spanish. A very simple display, illustrated with simplified 3D models.
- Dihedral angles in proteins: an interactive display of phi and psi dihedral angles using a model of a tripeptide.
- A regular page in Proteopedia.
- Simple presentation, featuring a 3D model with planes, clashes and animations.
- Phi and Psi Angles: a more detailed, guided explanation of determination and display of angles in the 3D model.
- A regular page in Proteopedia.
- The Ramachandran Plot
- A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010.
- Extensive description.
- Ramachandran Plot Inspection
- A special "Tutorial" page in Proteopedia (by Angel Herráez) and an equivalent page in Spanish
- Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations.
- The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins
- A special "Tutorial" page in Proteopedia (by Eric Martz)
- That tutorial repurposed as a slideshow with animated images (a Google Docs presentation):
- The slideshow is also available as a YouTube Video (in English), including explanation of dihedral angles with animated illustration.
- A quiz to self-assess understanding of the tutorial or the slideshow:
- Another animation of phi and psi angles connected to a Ramachandran plot (by David Jollie)
- Ramachandran outlier showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.
