This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5edn

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:22, 5 July 2023) (edit) (undo)
 
Line 1: Line 1:
==Structure of HOXB13-DNA(TCG) complex==
==Structure of HOXB13-DNA(TCG) complex==
-
<StructureSection load='5edn' size='340' side='right' caption='[[5edn]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
+
<StructureSection load='5edn' size='340' side='right'caption='[[5edn]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5edn]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EDN OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5EDN FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5edn]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5EDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5EDN FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HOXB13 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5edn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5edn OCA], [http://pdbe.org/5edn PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5edn RCSB], [http://www.ebi.ac.uk/pdbsum/5edn PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5edn ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5edn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5edn OCA], [https://pdbe.org/5edn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5edn RCSB], [https://www.ebi.ac.uk/pdbsum/5edn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5edn ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/HXB13_HUMAN HXB13_HUMAN]] Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
+
[https://www.uniprot.org/uniprot/HXB13_HUMAN HXB13_HUMAN] Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 26: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Jolma, A]]
+
[[Category: Large Structures]]
-
[[Category: Morgunova, E]]
+
[[Category: Synthetic construct]]
-
[[Category: Popov, A]]
+
[[Category: Jolma A]]
-
[[Category: Taipale, J]]
+
[[Category: Morgunova E]]
-
[[Category: Yin, Y]]
+
[[Category: Popov A]]
-
[[Category: Complex]]
+
[[Category: Taipale J]]
-
[[Category: Dna]]
+
[[Category: Yin Y]]
-
[[Category: Transcription]]
+
-
[[Category: Transcription factor]]
+

Current revision

Structure of HOXB13-DNA(TCG) complex

PDB ID 5edn

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5edn"
Personal tools