This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5zqb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Penicillin G bound form==
==Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Penicillin G bound form==
-
<StructureSection load='5zqb' size='340' side='right' caption='[[5zqb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='5zqb' size='340' side='right'caption='[[5zqb]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5zqb]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Lismo Lismo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZQB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZQB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5zqb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Listeria_monocytogenes_EGD-e Listeria monocytogenes EGD-e]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZQB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZQB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PNM:OPEN+FORM+-+PENICILLIN+G'>PNM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.896&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lmo2812 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=169963 LISMO])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PNM:OPEN+FORM+-+PENICILLIN+G'>PNM</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zqb OCA], [http://pdbe.org/5zqb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zqb RCSB], [http://www.ebi.ac.uk/pdbsum/5zqb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zqb ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zqb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zqb OCA], [https://pdbe.org/5zqb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zqb RCSB], [https://www.ebi.ac.uk/pdbsum/5zqb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zqb ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8Y3M3_LISMO Q8Y3M3_LISMO]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lismo]]
+
[[Category: Large Structures]]
-
[[Category: Jeong, J H]]
+
[[Category: Listeria monocytogenes EGD-e]]
-
[[Category: Kim, Y G]]
+
[[Category: Jeong JH]]
-
[[Category: Antibiotic]]
+
[[Category: Kim YG]]
-
[[Category: Hypothetical]]
+
-
[[Category: Listeria monocytogene]]
+
-
[[Category: Lmo2812]]
+
-
[[Category: Lmpbpd2]]
+
-
[[Category: Penicillin-binding protein]]
+

Current revision

Crystal Structure of Penicillin-Binding Protein D2 from Listeria monocytogenes in the Penicillin G bound form

PDB ID 5zqb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools