2ogg

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structure of B. subtilis trehalose repressor (TreR) effector binding domain==
==Structure of B. subtilis trehalose repressor (TreR) effector binding domain==
-
<StructureSection load='2ogg' size='340' side='right' caption='[[2ogg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='2ogg' size='340' side='right'caption='[[2ogg]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2ogg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2OGG FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2ogg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"vibrio_subtilis"_ehrenberg_1835 "vibrio subtilis" ehrenberg 1835]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OGG FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">treR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">treR ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1423 "Vibrio subtilis" Ehrenberg 1835])</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ogg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ogg OCA], [http://pdbe.org/2ogg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2ogg RCSB], [http://www.ebi.ac.uk/pdbsum/2ogg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2ogg ProSAT], [http://www.topsan.org/Proteins/MCSG/2ogg TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ogg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ogg OCA], [https://pdbe.org/2ogg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ogg RCSB], [https://www.ebi.ac.uk/pdbsum/2ogg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ogg ProSAT], [https://www.topsan.org/Proteins/MCSG/2ogg TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/TRER_BACSU TRER_BACSU]] Repressor for the trehalose operon (treP and treA). Binds trehalose-6-phosphate, which probably acts as an inducer.
+
[[https://www.uniprot.org/uniprot/TRER_BACSU TRER_BACSU]] Repressor for the trehalose operon (treP and treA). Binds trehalose-6-phosphate, which probably acts as an inducer.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 24: Line 24:
</StructureSection>
</StructureSection>
[[Category: Vibrio subtilis ehrenberg 1835]]
[[Category: Vibrio subtilis ehrenberg 1835]]
 +
[[Category: Large Structures]]
[[Category: Borek, D]]
[[Category: Borek, D]]
[[Category: Joachimiak, A]]
[[Category: Joachimiak, A]]

Revision as of 12:55, 9 June 2021

Structure of B. subtilis trehalose repressor (TreR) effector binding domain

PDB ID 2ogg

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools