2pya
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Ultra-high resolution structure of P. abyssi rubredoxin W4L/R5S/A44S== | ==Ultra-high resolution structure of P. abyssi rubredoxin W4L/R5S/A44S== | ||
| - | <StructureSection load='2pya' size='340' side='right' caption='[[2pya]], [[Resolution|resolution]] 0.86Å' scene=''> | + | <StructureSection load='2pya' size='340' side='right'caption='[[2pya]], [[Resolution|resolution]] 0.86Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2pya]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2pya]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/"pyrococcus_abyssi"_erauso_et_al._1993 "pyrococcus abyssi" erauso et al. 1993]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PYA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2PYA FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1yk5|1yk5]], [[1yk4|1yk4]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1yk5|1yk5]], [[1yk4|1yk4]]</div></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rub ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rub ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=29292 "Pyrococcus abyssi" Erauso et al. 1993])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2pya FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pya OCA], [https://pdbe.org/2pya PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2pya RCSB], [https://www.ebi.ac.uk/pdbsum/2pya PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2pya ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/RUBR_PYRAB RUBR_PYRAB]] Rubredoxin is a small nonheme, iron protein lacking acid-labile sulfide. Its single Fe, chelated to 4 Cys, functions as an electron acceptor and may also stabilize the conformation of the molecule (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 35: | Line 35: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Pyrococcus abyssi erauso et al. 1993]] | [[Category: Pyrococcus abyssi erauso et al. 1993]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Boenisch, H]] | [[Category: Boenisch, H]] | ||
[[Category: Ladenstein, R]] | [[Category: Ladenstein, R]] | ||
[[Category: Electron transport]] | [[Category: Electron transport]] | ||
[[Category: O-h...s-fe hydrogen bond]] | [[Category: O-h...s-fe hydrogen bond]] | ||
Revision as of 15:36, 17 June 2021
Ultra-high resolution structure of P. abyssi rubredoxin W4L/R5S/A44S
| |||||||||||
