2pk8

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2pk8.gif|left|200px]]
[[Image:2pk8.gif|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2pk8 |SIZE=350|CAPTION= <scene name='initialview01'>2pk8</scene>, resolution 1.85&Aring;
+
The line below this paragraph, containing "STRUCTURE_2pk8", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=AUC:GOLD+(I)+CYANIDE+ION'>AUC</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE= PF0899 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 Pyrococcus furiosus DSM 3638])
+
-->
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam08967 DUF1884]</span>
+
{{STRUCTURE_2pk8| PDB=2pk8 | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2pk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2pk8 OCA], [http://www.ebi.ac.uk/pdbsum/2pk8 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2pk8 RCSB]</span>
+
-
}}
+
'''Crystal structure of an uncharacterized protein PF0899 from Pyrococcus furiosus'''
'''Crystal structure of an uncharacterized protein PF0899 from Pyrococcus furiosus'''
Line 19: Line 16:
==About this Structure==
==About this Structure==
-
2PK8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. This structure supersedes the now removed PDB entry 1SHE. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PK8 OCA].
+
2PK8 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus_dsm_3638 Pyrococcus furiosus dsm 3638]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1she 1she]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2PK8 OCA].
==Reference==
==Reference==
Line 44: Line 41:
[[Category: Tempel, W.]]
[[Category: Tempel, W.]]
[[Category: Wang, B-C.]]
[[Category: Wang, B-C.]]
-
[[Category: pf0899]]
+
[[Category: Pf0899]]
-
[[Category: protein structure initiative]]
+
[[Category: Protein structure initiative]]
-
[[Category: psi]]
+
[[Category: Psi]]
-
[[Category: pyrococcus furiosus]]
+
[[Category: Pyrococcus furiosus]]
-
[[Category: secsg]]
+
[[Category: Secsg]]
-
[[Category: southeast collaboratory for structural genomic]]
+
[[Category: Southeast collaboratory for structural genomic]]
-
[[Category: structural genomic]]
+
[[Category: Structural genomic]]
-
[[Category: uncharacterized protein]]
+
[[Category: Uncharacterized protein]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 13:17:04 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:37:03 2008''
+

Revision as of 10:17, 4 May 2008

Image:2pk8.gif

Template:STRUCTURE 2pk8

Crystal structure of an uncharacterized protein PF0899 from Pyrococcus furiosus


Overview

The hypothetical protein PF0899 is a 95-residue peptide from the hyperthermophilic archaeon Pyrococcus furiosus that represents a gene family with six members. P. furiosus ORF PF0899 has been cloned, expressed and crystallized and its structure has been determined by the Southeast Collaboratory for Structural Genomics (http://www.secsg.org). The structure was solved using the SCA2Structure pipeline from multiple data sets and has been refined to 1.85 A against the highest resolution data set collected (a presumed gold derivative), with a crystallographic R factor of 21.0% and R(free) of 24.0%. The refined structure shows some structural similarity to a wedge-shaped domain observed in the structure of the major capsid protein from bacteriophage HK97, suggesting that PF0899 may be a structural protein.

About this Structure

2PK8 is a Single protein structure of sequence from Pyrococcus furiosus dsm 3638. This structure supersedes the now removed PDB entry 1she. Full crystallographic information is available from OCA.

Reference

Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution., Kelley LL, Dillard BD, Tempel W, Chen L, Shaw N, Lee D, Newton MG, Sugar FJ, Jenney FE Jr, Lee HS, Shah C, Poole FL 3rd, Adams MW, Richardson JS, Richardson DC, Liu ZJ, Wang BC, Rose J, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Jul 1;63(Pt, 7):549-52. Epub 2007 Jun 11. PMID:17620707 Page seeded by OCA on Sun May 4 13:17:04 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2pk8"
Personal tools