This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


5y9p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:25, 22 November 2023) (edit) (undo)
 
Line 1: Line 1:
==Staphylococcus aureus RNase HII==
==Staphylococcus aureus RNase HII==
-
<StructureSection load='5y9p' size='340' side='right' caption='[[5y9p]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
+
<StructureSection load='5y9p' size='340' side='right'caption='[[5y9p]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5y9p]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_aureus"_(rosenbach_1884)_zopf_1885 "micrococcus aureus" (rosenbach 1884) zopf 1885]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y9P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5y9p]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus Staphylococcus aureus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y9P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y9P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rnhB, AYM28_06605, AYM37_06605, ERS072738_01674, ERS074020_01342, HMPREF3211_01288 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1280 "Micrococcus aureus" (Rosenbach 1884) Zopf 1885])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_H Ribonuclease H], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.4 3.1.26.4] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9p OCA], [https://pdbe.org/5y9p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y9p RCSB], [https://www.ebi.ac.uk/pdbsum/5y9p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9p ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y9p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y9p OCA], [http://pdbe.org/5y9p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y9p RCSB], [http://www.ebi.ac.uk/pdbsum/5y9p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y9p ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/A0A0D6HS53_STAAU A0A0D6HS53_STAAU]] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.[HAMAP-Rule:MF_00052][RuleBase:RU003515][SAAS:SAAS00946624]
+
[https://www.uniprot.org/uniprot/RNH2_STAA8 RNH2_STAA8] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.[HAMAP-Rule:MF_00052]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 19:
</div>
</div>
<div class="pdbe-citations 5y9p" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 5y9p" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ribonuclease H]]
+
[[Category: Large Structures]]
-
[[Category: Hang, T]]
+
[[Category: Staphylococcus aureus]]
-
[[Category: Wu, M]]
+
[[Category: Hang T]]
-
[[Category: Zhang, X]]
+
[[Category: Wu M]]
-
[[Category: Endonuclease]]
+
[[Category: Zhang X]]
-
[[Category: Hydrolase]]
+

Current revision

Staphylococcus aureus RNase HII

PDB ID 5y9p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5y9p"
Personal tools