Ribozyme
From Proteopedia
(Difference between revisions)
| Line 88: | Line 88: | ||
*Group I intron ribozymes | *Group I intron ribozymes | ||
| - | **[[1u6b]], [[1zzn]], [[3bo2]], [[3bo3]], [[3bo4]], | + | **[[1u6b]], [[1zzn]], [[3bo2]], [[3bo3]], [[3bo4]], [[3iin]] - RZ P9 + RNA + U1 small nuclear ribonucleoprotein <br/> |
**[[2r8s]] – RZ P4-P6 domain + antibody – mouse<BR /> | **[[2r8s]] – RZ P4-P6 domain + antibody – mouse<BR /> | ||
**[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | **[[1y0q]] – RZ group I + RNA – Staphylococcus phage twort<BR /> | ||
| Line 95: | Line 95: | ||
**[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | **[[1l8v]], [[1gid]] – TtRZ P4-P6 domain<BR /> | ||
**[[1hr2]] - TtRZ P4-P6 domain (mutant) <BR /> | **[[1hr2]] - TtRZ P4-P6 domain (mutant) <BR /> | ||
| + | **[[3hhn]] – ligase RZ + U1 small nuclear ribonucleoprotein A<BR /> | ||
| + | **[[3r1h]], [[3r1l]] - ligase RZ (mutant) + U1 small nuclear ribonucleoprotein A+ RNA<br /> | ||
*Group II intron ribozymes | *Group II intron ribozymes | ||
| - | **[[5j01]], [[5j02]] - RZ - ''Oceanobacillus iheyensis'' <br/> | ||
**[[6ez0]] – yRZ - NMR<BR /> | **[[6ez0]] – yRZ - NMR<BR /> | ||
| + | **[[5j01]], [[5j02]] - OiRZ - ''Oceanobacillus iheyensis'' <br/> | ||
| + | **[[6t3k]], [[6t3n]], [[6t3r]], [[6t3s]] - OiRZ (mutant) <br/> | ||
| + | **[[3fs0]], [[3ftm]] - ligase RZ<br /> | ||
*Various ribozymes | *Various ribozymes | ||
Revision as of 10:58, 26 October 2020
| |||||||||||
3D Structures of Ribozymes
Updated on 26-October-2020
References
- ↑ Tang J, Breaker RR. Rational design of allosteric ribozymes. Chem Biol. 1997 Jun;4(6):453-9. PMID:9224568
- ↑ Amarzguioui M, Prydz H. Hammerhead ribozyme design and application. Cell Mol Life Sci. 1998 Nov;54(11):1175-202. PMID:9849614 doi:http://dx.doi.org/10.1007/s000180050247
- ↑ Cech TR. Self-splicing of group I introns. Annu Rev Biochem. 1990;59:543-68. PMID:2197983 doi:http://dx.doi.org/10.1146/annurev.bi.59.070190.002551
- ↑ Roth A, Weinberg Z, Chen AG, Kim PB, Ames TD, Breaker RR. A widespread self-cleaving ribozyme class is revealed by bioinformatics. Nat Chem Biol. 2014 Jan;10(1):56-60. doi: 10.1038/nchembio.1386. Epub 2013 Nov, 17. PMID:24240507 doi:http://dx.doi.org/10.1038/nchembio.1386
- ↑ Weinberg Z, Kim PB, Chen TH, Li S, Harris KA, Lunse CE, Breaker RR. New classes of self-cleaving ribozymes revealed by comparative genomics analysis. Nat Chem Biol. 2015 Aug;11(8):606-10. doi: 10.1038/nchembio.1846. Epub 2015 Jul, 13. PMID:26167874 doi:http://dx.doi.org/10.1038/nchembio.1846
Proteopedia Page Contributors and Editors (what is this?)
Michal Harel, Wayne Decatur, Joel L. Sussman, Alexander Berchansky
