2q2l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2q2l.jpg|left|200px]]
[[Image:2q2l.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2q2l |SIZE=350|CAPTION= <scene name='initialview01'>2q2l</scene>, resolution 2.367&Aring;
+
The line below this paragraph, containing "STRUCTURE_2q2l", creates the "Structure Box" on the page.
-
|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+1001'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+B+1002'>AC2</scene>, <scene name='pdbsite=AC3:Iod+Binding+Site+For+Residue+A+2003'>AC3</scene>, <scene name='pdbsite=AC4:Iod+Binding+Site+For+Residue+B+2006'>AC4</scene> and <scene name='pdbsite=AC5:Iod+Binding+Site+For+Residue+B+2009'>AC5</scene>
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=IOD:IODIDE+ION'>IOD</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Superoxide_dismutase Superoxide dismutase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.15.1.1 1.15.1.1] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd00305 Cu-Zn_Superoxide_Dismutase]</span>
+
{{STRUCTURE_2q2l| PDB=2q2l | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2q2l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2q2l OCA], [http://www.ebi.ac.uk/pdbsum/2q2l PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2q2l RCSB]</span>
+
-
}}
+
'''Crystal Structure of Superoxide Dismutase from P. atrosanguina'''
'''Crystal Structure of Superoxide Dismutase from P. atrosanguina'''
Line 19: Line 16:
==About this Structure==
==About this Structure==
-
2Q2L is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Potentilla_atrosanguinea Potentilla atrosanguinea]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q2L OCA].
+
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2Q2L OCA].
==Reference==
==Reference==
SAD phasing of a structure based on cocrystallized iodides using an in-house Cu Kalpha X-ray source: effects of data redundancy and completeness on structure solution., Yogavel M, Gill J, Mishra PC, Sharma A, Acta Crystallogr D Biol Crystallogr. 2007 Aug;63(Pt 8):931-4. Epub 2007, Jul 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17642520 17642520]
SAD phasing of a structure based on cocrystallized iodides using an in-house Cu Kalpha X-ray source: effects of data redundancy and completeness on structure solution., Yogavel M, Gill J, Mishra PC, Sharma A, Acta Crystallogr D Biol Crystallogr. 2007 Aug;63(Pt 8):931-4. Epub 2007, Jul 17. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17642520 17642520]
-
[[Category: Potentilla atrosanguinea]]
 
-
[[Category: Protein complex]]
 
[[Category: Superoxide dismutase]]
[[Category: Superoxide dismutase]]
[[Category: Gill, J.]]
[[Category: Gill, J.]]
Line 30: Line 25:
[[Category: Mishra, P C.]]
[[Category: Mishra, P C.]]
[[Category: Sharma, A.]]
[[Category: Sharma, A.]]
-
[[Category: antioxidant]]
+
[[Category: Antioxidant]]
-
[[Category: metal-binding]]
+
[[Category: Metal-binding]]
-
[[Category: oxidoreductase]]
+
[[Category: Oxidoreductase]]
-
[[Category: sad]]
+
[[Category: Sad]]
-
[[Category: sod]]
+
[[Category: Sod]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 14:12:51 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:43:43 2008''
+

Revision as of 11:12, 4 May 2008

Image:2q2l.jpg

Template:STRUCTURE 2q2l

Crystal Structure of Superoxide Dismutase from P. atrosanguina


Overview

Superoxide dismutase (SOD) from Potentilla atrosanguinea (Wall. ex. Lehm.) was crystallized using 20% PEG 3350 and 0.2 M ammonium iodide and diffraction data were collected to 2.36 A resolution using an in-house Cu Kalpha X-ray source. Analyses show that data with a redundancy of 3.2 were sufficient to determine the structure by the SAD technique using the iodine anomalous signal. This redundancy is lower than that in previous cases in which protein structures were determined using iodines for phasing and in-house copper X-ray sources. Cocrystallization of proteins with halide salts such as ammonium iodide in combination with copper-anode X-ray radiation can therefore serve as a powerful and easy avenue for structure solution.

About this Structure

Full crystallographic information is available from OCA.

Reference

SAD phasing of a structure based on cocrystallized iodides using an in-house Cu Kalpha X-ray source: effects of data redundancy and completeness on structure solution., Yogavel M, Gill J, Mishra PC, Sharma A, Acta Crystallogr D Biol Crystallogr. 2007 Aug;63(Pt 8):931-4. Epub 2007, Jul 17. PMID:17642520 Page seeded by OCA on Sun May 4 14:12:51 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2q2l"
Personal tools