We apologize for Proteopedia being slow to respond. For the past two years, a new implementation of Proteopedia has been being built. Soon, it will replace this 18-year old system. All existing content will be moved to the new system at a date that will be announced here.

5vvi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:59, 4 October 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine==
==Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine==
-
<StructureSection load='5vvi' size='340' side='right' caption='[[5vvi]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
+
<StructureSection load='5vvi' size='340' side='right'caption='[[5vvi]], [[Resolution|resolution]] 2.28&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[5vvi]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrt4 Agrt4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VVI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VVI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[5vvi]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens_(strain_Ach5) Agrobacterium tumefaciens (strain Ach5)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VVI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VVI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.28&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6DB:OCTOPINE'>6DB</scene>, <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">occR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=176298 AGRT4])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vvi OCA], [https://pdbe.org/5vvi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vvi RCSB], [https://www.ebi.ac.uk/pdbsum/5vvi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vvi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vvi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vvi OCA], [http://pdbe.org/5vvi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vvi RCSB], [http://www.ebi.ac.uk/pdbsum/5vvi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vvi ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/OCCR_AGRT4 OCCR_AGRT4]] Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression.
+
[https://www.uniprot.org/uniprot/OCCR_AGRT4 OCCR_AGRT4] Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression.
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Agrt4]]
+
[[Category: Large Structures]]
-
[[Category: Chhor, G]]
+
[[Category: Chhor G]]
-
[[Category: Jedrzejczak, R]]
+
[[Category: Jedrzejczak R]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Kim, Y]]
+
[[Category: Kim Y]]
-
[[Category: Structural genomic]]
+
[[Category: Winans SC]]
-
[[Category: Winans, S C]]
+
-
[[Category: Alpha-beta structure]]
+
-
[[Category: Mcsg]]
+
-
[[Category: Psi-biology]]
+
-
[[Category: Transcription]]
+
-
[[Category: Type 2 periplasmic binding fold]]
+

Current revision

Crystal Structure of the Ligand Binding Domain of LysR-type Transcriptional Regulator, OccR from Agrobacterium tumefaciens in the Complex with Octopine

PDB ID 5vvi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5vvi"
Personal tools