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| | ==Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, ligand-free form== | | ==Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, ligand-free form== |
| - | <StructureSection load='5zxg' size='340' side='right' caption='[[5zxg]], [[Resolution|resolution]] 2.40Å' scene=''> | + | <StructureSection load='5zxg' size='340' side='right'caption='[[5zxg]], [[Resolution|resolution]] 2.40Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5zxg]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_globiformis"_(conn_1928)_bergey_et_al._1930 "achromobacter globiformis" (conn 1928) bergey et al. 1930]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZXG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZXG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5zxg]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arthrobacter_globiformis Arthrobacter globiformis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZXG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZXG FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cmmF ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1665 "Achromobacter globiformis" (Conn 1928) Bergey et al. 1930])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zxg OCA], [http://pdbe.org/5zxg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zxg RCSB], [http://www.ebi.ac.uk/pdbsum/5zxg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zxg ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zxg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zxg OCA], [https://pdbe.org/5zxg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zxg RCSB], [https://www.ebi.ac.uk/pdbsum/5zxg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zxg ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/D2YYE1_ARTGO D2YYE1_ARTGO] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Arakawa, T]] | + | [[Category: Arthrobacter globiformis]] |
| - | [[Category: Fushinobu, S]] | + | [[Category: Large Structures]] |
| - | [[Category: Kohno, M]] | + | [[Category: Arakawa T]] |
| - | [[Category: Mori, T]] | + | [[Category: Fushinobu S]] |
| - | [[Category: Nishimoto, T]] | + | [[Category: Kohno M]] |
| - | [[Category: Hydrolase]]
| + | [[Category: Mori T]] |
| | + | [[Category: Nishimoto T]] |
| Structural highlights
Function
D2YYE1_ARTGO
Publication Abstract from PubMed
Cyclic alpha-maltosyl-(1-->6)-maltose (CMM,cyclo-{-->6)-alpha-d-Glcp-(1-->4)-alpha-d-Glcp-(1-->6)-alpha-d-Glcp-(1-->4)- alpha-d-Glcp-(1-->}) is a cyclic glucotetrasaccharide with alternating alpha-1,4 and alpha-1,6 linkages. CMM is composed of two maltose units and is one of the smallest cyclic glucooligosaccharides. While CMM is resistant to usual amylases, it is efficiently hydrolyzed by CMM hydrolase (CMMase), belonging to subfamily 20 of glycoside hydrolase family 13 (GH13_20). Here, we determined the ligand-free crystal structure of CMMase from the soil-associated bacterium Arthrobacter globiformis and its structures in complex with maltose, panose, and CMM to elucidate the structural basis of substrate recognition by CMMase. The structures disclosed that although the monomer structure consists of three domains commonly adopted by GH13 and other alpha-amylase-related enzymes, CMMase forms a unique wing-like dimer structure. The complex structure with CMM revealed four specific subsites, namely, -3', -2, -1, and +1'. We also observed that the bound CMM molecule adopts a low-energy conformer compared with the X-ray structure of a single CMM crystal, also determined here. Comparison of the CMMase active site with those in other enzymes of the GH13_20 family revealed that three regions forming the wall of the cleft, denoted PYF (Pro-203/Tyr-204/Phe-205), CS (Cys-163/Ser-164), and Y (Tyr-168), are present only in CMMase and are involved in CMM recognition. Combinations of multiple substitutions in these regions markedly decreased the activity toward CMM, indicating that the specificity for this cyclic tetrasaccharide is supported by the entire shape of the pocket. In summary, our work uncovers the mechanistical basis for the highly specific interactions of CMMase with its substrate CMM.
Structural features of a bacterial cyclic alpha-maltosyl-(1-->6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.,Kohno M, Arakawa T, Ota H, Mori T, Nishimoto T, Fushinobu S J Biol Chem. 2018 Sep 4. pii: RA118.004472. doi: 10.1074/jbc.RA118.004472. PMID:30181215[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Kohno M, Arakawa T, Ota H, Mori T, Nishimoto T, Fushinobu S. Structural features of a bacterial cyclic alpha-maltosyl-(1-->6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis. J Biol Chem. 2018 Sep 4. pii: RA118.004472. doi: 10.1074/jbc.RA118.004472. PMID:30181215 doi:http://dx.doi.org/10.1074/jbc.RA118.004472
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