5ni1

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==CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate==
==CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate==
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<StructureSection load='5ni1' size='340' side='right' caption='[[5ni1]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
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<StructureSection load='5ni1' size='340' side='right'caption='[[5ni1]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
<table><tr><td colspan='2'>[[5ni1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5me2 5me2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NI1 FirstGlance]. <br>
<table><tr><td colspan='2'>[[5ni1]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=5me2 5me2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5NI1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5NI1 FirstGlance]. <br>
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<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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We present a method for in-focus data acquisition with a phase plate that enables near-atomic resolution single particle reconstructions. Accurate focusing is the determining factor for obtaining high quality data. A double-area focusing strategy was implemented in order to achieve the required precision. With this approach we obtained a 3.2 A resolution reconstruction of the Thermoplasma acidophilum 20S proteasome. The phase plate matches or slightly exceeds the performance of the conventional defocus approach. Spherical aberration becomes a limiting factor for achieving resolutions below 3 A with in-focus phase plate images. The phase plate could enable single particle analysis of challenging samples in terms of small size, heterogeneity and flexibility that are difficult to solve by the conventional defocus approach.
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With the advent of direct electron detectors, the perspectives of cryo-electron microscopy (cryo-EM) have changed in a profound way. These cameras are superior to previous detectors in coping with the intrinsically low contrast and beam-induced motion of radiation-sensitive organic materials embedded in amorphous ice, and hence they have enabled the structure determination of many macromolecular assemblies to atomic or near-atomic resolution. Nevertheless, there are still limitations and one of them is the size of the target structure. Here, we report the use of a Volta phase plate in determining the structure of human haemoglobin (64 kDa) at 3.2 A. Our results demonstrate that this method can be applied to complexes that are significantly smaller than those previously studied by conventional defocus-based approaches. Cryo-EM is now close to becoming a fast and cost-effective alternative to crystallography for high-resolution protein structure determination.
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Cryo-EM single particle analysis with the Volta phase plate.,Danev R, Baumeister W Elife. 2016 Mar 7;5. pii: e13046. doi: 10.7554/eLife.13046. PMID:26949259<ref>PMID:26949259</ref>
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Cryo-EM structure of haemoglobin at 3.2 A determined with the Volta phase plate.,Khoshouei M, Radjainia M, Baumeister W, Danev R Nat Commun. 2017 Jun 30;8:16099. doi: 10.1038/ncomms16099. PMID:28665412<ref>PMID:28665412</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</StructureSection>
</StructureSection>
[[Category: Human]]
[[Category: Human]]
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[[Category: Large Structures]]
[[Category: Baumeister, W]]
[[Category: Baumeister, W]]
[[Category: Bunker, R]]
[[Category: Bunker, R]]

Revision as of 16:44, 11 December 2019

CryoEM structure of haemoglobin at 3.2 A determined with the Volta phase plate

PDB ID 5ni1

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