2rcx

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[[Image:2rcx.gif|left|200px]]
[[Image:2rcx.gif|left|200px]]
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{{Structure
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<!--
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|PDB= 2rcx |SIZE=350|CAPTION= <scene name='initialview01'>2rcx</scene>, resolution 2.000&Aring;
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The line below this paragraph, containing "STRUCTURE_2rcx", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+1'>AC1</scene>, <scene name='pdbsite=AC2:Po4+Binding+Site+For+Residue+A+362'>AC2</scene>, <scene name='pdbsite=AC3:Sm4+Binding+Site+For+Residue+A+964'>AC3</scene> and <scene name='pdbsite=AC4:Sm4+Binding+Site+For+Residue+B+964'>AC4</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=SM4:(1R)-1-(2-THIOPHEN-2-YL-ACETYLAMINO)-1-(3-(2-CARBOXYVINYL)-PHENYL)+METHYLBORONIC+ACID'>SM4</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= ampC, ampA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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-->
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK11289 ampC]</span>
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{{STRUCTURE_2rcx| PDB=2rcx | SCENE= }}
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|RELATEDENTRY=[[1ke4|1KE4]], [[1fsw|1FSW]], [[1mxo|1MXO]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rcx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rcx OCA], [http://www.ebi.ac.uk/pdbsum/2rcx PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rcx RCSB]</span>
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}}
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'''AmpC Beta-lactamase in complex with (1R)-1-(2-Thiophen-2-yl-acetylamino)-1-(3-(2-carboxyvinyl)-phenyl) methylboronic acid'''
'''AmpC Beta-lactamase in complex with (1R)-1-(2-Thiophen-2-yl-acetylamino)-1-(3-(2-carboxyvinyl)-phenyl) methylboronic acid'''
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[[Category: Prati, F.]]
[[Category: Prati, F.]]
[[Category: Shoichet, B K.]]
[[Category: Shoichet, B K.]]
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[[Category: ampc]]
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[[Category: Ampc]]
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[[Category: antibiotic resistance]]
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[[Category: Antibiotic resistance]]
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[[Category: beta-lactamase]]
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[[Category: Beta-lactamase]]
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[[Category: cephalosporinase]]
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[[Category: Cephalosporinase]]
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[[Category: periplasm]]
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[[Category: Periplasm]]
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[[Category: serine hydrolase]]
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[[Category: Serine hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 16:39:30 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:59:02 2008''
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Revision as of 13:39, 4 May 2008

Template:STRUCTURE 2rcx

AmpC Beta-lactamase in complex with (1R)-1-(2-Thiophen-2-yl-acetylamino)-1-(3-(2-carboxyvinyl)-phenyl) methylboronic acid


Overview

Boronic acids have proved to be promising selective inhibitors of beta-lactamases, acting as transition state analogues. Starting from a previously described nanomolar inhibitor of AmpC beta-lactamase, three new inhibitors were designed to gain interactions with highly conserved residues, such as Asn343, and to bind more tightly to the enzyme. Among these, one was obtained by stereoselective synthesis and succeeded in placing its anionic group into the carboxylate binding site of the enzyme, as revealed by X-ray crystallography of the complex inhibitor/AmpC. Nevertheless, it failed at improving affinity, when compared to the lead from which it was derived. The origins of this structural and energetic discrepancy are discussed.

About this Structure

2RCX is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Structure-based optimization of cephalothin-analogue boronic acids as beta-lactamase inhibitors., Morandi S, Morandi F, Caselli E, Shoichet BK, Prati F, Bioorg Med Chem. 2007 Nov 6;. PMID:17997318 Page seeded by OCA on Sun May 4 16:39:30 2008

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