RNA polymerase
From Proteopedia
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**[[3p8b]] – PfRNAP subunit ε’’ + transcription antitermination protein <br /> | **[[3p8b]] – PfRNAP subunit ε’’ + transcription antitermination protein <br /> | ||
**[[3qqc]] - PfRNAP subunits β, ε’’ + transcription antitermination protein<br /> | **[[3qqc]] - PfRNAP subunits β, ε’’ + transcription antitermination protein<br /> | ||
| - | **[[3aoh]], [[3aoi]] - TtRNAP subunits α,β,β’,ω + DNA +RNA + GFH1<br /> | ||
**[[2be5]]- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor <br /> | **[[2be5]]- TtRNAP subunits α,β,β’,ω + σ factor + inhibitor <br /> | ||
**[[2cw0]], [[5tmf]] - TtRNAP subunits α,β,β’,ω + σ factor<br /> | **[[2cw0]], [[5tmf]] - TtRNAP subunits α,β,β’,ω + σ factor<br /> | ||
**[[3wod]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39<br /> | **[[3wod]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39<br /> | ||
**[[4mq9]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077<br /> | **[[4mq9]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077<br /> | ||
| - | **[[5tmc]] - TtRNAP subunits α,β,β’,ω + | + | **[[5tmc]] - TtRNAP subunits α,β,β’,ω + σ factor + protein<br /> |
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**[[3dxj]], [[3eql]] - TtRNAP subunits α,β,β’,ω + σ factor + antibiotic<br /> | **[[3dxj]], [[3eql]] - TtRNAP subunits α,β,β’,ω + σ factor + antibiotic<br /> | ||
| - | **[[6cuu]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | ||
**[[5xj0]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76<br /> | **[[5xj0]] - TtRNAP subunits α,β,β’,ω + σ factor + GP39 + GP76<br /> | ||
**[[4wqt]] - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor<br /> | **[[4wqt]] - TtRNAP subunits α,β,β’,ω + RNA cleavage stimulating factor<br /> | ||
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**[[2lmc]] - EcRNAP subunit β + RNAP inhibitor <br /> | **[[2lmc]] - EcRNAP subunit β + RNAP inhibitor <br /> | ||
**[[3mmp]] - EcRNAP subunit β + EF-TU<br /> | **[[3mmp]] - EcRNAP subunit β + EF-TU<br /> | ||
| + | **[[4ljz]], [[4lk1]], [[4mey]], [[4xsx]], [[4xsy]], [[4xsz]], [[4zh2]], [[4zh3]] , [[4zh4]], [[5byh]], [[5nwt]], [[5uag]], [[5uah]], [[5uaj]], [[5ual]], [[5uaq]], [[5ui8]] - EcRNAP subunits α,β,β’,ω + σ factor <br /> | ||
| + | **[[6c9y]] - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | ||
| + | **[[4mex]] - EcRNAP subunits α,β,β’,ω + σ factor + salinamide<br /> | ||
| + | **[[4lk0]], [[4llg]], [[4mex]], [[4yfk]], [[4yfn]], [[4yfx]] - EcRNAP subunits α,β,β’,ω + σ factor + RNAP inhibitor<br /> | ||
| + | **[[5uac]], [[6cux]] - EcRNAP subunits α,β,β’,ω + σ factor + antibiotic<br /> | ||
| + | **[[6byu]] - EcRNAP subunits α,β,β’,ω + σ factor + PPAPP<br /> | ||
| + | **[[5w1s]] - EcRNAP subunits α,β,β’,ω + σ factor + TRAR<br /> | ||
| + | **[[5tbz]] - EcRNAP subunits α,β,β’ + NusG – Cryo EM<br /> | ||
| + | **[[6fbv]] - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM<br /> | ||
| + | **[[3ihq]], [[1z3e]], [[3gfk]] - BsRNAP subunit α + regulatory protein SPX<br /> | ||
| + | **[[1l9u]] - TaRNAP subunits α,β,β’,ω + σ factor<br /> | ||
| + | **[[2jzb]] – RNAP subunit α + NusA transcription elongation factor – ''Yersinia pseudotuberculosis''<br /> | ||
| + | **[[3tbi]] - RNAP subunit β + GP33 – Enterobacteria phage T4<br /> | ||
| + | **[[3lpe ]]- MjRNAP subunit ε’’ + transcription antitermination protein<br /> | ||
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| + | *''Prokaryotic DNA-dependent RNAP complex with protein + DNA/RNA'' | ||
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| + | **[[3aoh]], [[3aoi]] - TtRNAP subunits α,β,β’,ω + DNA + RNA + GFH1<br /> | ||
| + | **[[4oin]], [[4oio]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA<br /> | ||
| + | **[[4oip]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + nucleotide<br /> | ||
| + | **[[4oiq]], [[4oir]] - TtRNAP subunits α,β,β’,ω + σ factor + GE23077 + DNA + antibiotic<br /> | ||
| + | **[[4g7h]], [[4g7o]], [[4g7z]], [[4q4z]], [[5d4d]], [[5d4e]], [[5voi]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
| + | **[[4q5s]], [[5d4c]], [[5e17]], [[5e18]], [[5vo8]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | ||
| + | **[[5i2d]] - TtRNAP subunits α,β,β’,ω + σ factor + transcriptional regulator + DNA + RNA<br /> | ||
| + | **[[6cuu]] - TtRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | ||
**[[3t72]] - EcRNAP subunit β + Pho box DNA + PhoB<br /> | **[[3t72]] - EcRNAP subunit β + Pho box DNA + PhoB<br /> | ||
**[[1lb2]], [[3n4m]] - EcRNAP subunit α + DNA + CAP<br /> | **[[1lb2]], [[3n4m]] - EcRNAP subunit α + DNA + CAP<br /> | ||
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**[[5ciz]] - EcRNAP subunit α + DNA + CRP<br /> | **[[5ciz]] - EcRNAP subunit α + DNA + CRP<br /> | ||
**[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | **[[3n97]] - EcRNAP subunit α C terminal + DNA + σ factor<br /> | ||
| - | **[[4ljz]], [[4lk1]], [[4mey]], [[4xsx]], [[4xsy]], [[4xsz]], [[4zh2]], [[4zh3]] , [[4zh4]], [[5byh]], [[5nwt]], [[5uag]], [[5uah]], [[5uaj]], [[5ual]], [[5uaq]], [[5ui8]] - EcRNAP subunits α,β,β’,ω + σ factor <br /> | ||
| - | **[[6c9y]] - EcRNAP subunits α,β,β’,ω + σ factor – Cryo EM<br /> | ||
**[[5nsr]], [[5nss]], [[6gh6]], [[6gh5]], [[6ca0]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM<br /> | **[[5nsr]], [[5nss]], [[6gh6]], [[6gh5]], [[6ca0]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA – Cryo EM<br /> | ||
**[[5vt0]] - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM<br /> | **[[5vt0]] - EcRNAP subunits α,β,β’,ω + σ factor + RNA – Cryo EM<br /> | ||
**[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | **[[4yln]], [[4ylo]], [[4ylp]], [[5ipl]], [[5ipm]], [[5ipn]], [[6gfw]] - EcRNAP subunits α,β,β’,ω + σ factor + DNA + RNA<br /> | ||
**[[6b6h]] - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM<br /> | **[[6b6h]] - EcRNAP subunits α,β,β’,ω + σ factor + CAP + DNA + RNA – Cryo EM<br /> | ||
| - | **[[4mex]] - EcRNAP subunits α,β,β’,ω + σ factor + salinamide<br /> | ||
| - | **[[4lk0]], [[4llg]], [[4mex]], [[4yfk]], [[4yfn]], [[4yfx]] - EcRNAP subunits α,β,β’,ω + σ factor + RNAP inhibitor<br /> | ||
| - | **[[5uac]], [[6cux]] - EcRNAP subunits α,β,β’,ω + σ factor + antibiotic<br /> | ||
| - | **[[6byu]] - EcRNAP subunits α,β,β’,ω + σ factor + PPAPP<br /> | ||
| - | **[[5w1s]] - EcRNAP subunits α,β,β’,ω + σ factor + TRAR<br /> | ||
**[[3iyd]] - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA<br /> | **[[3iyd]] - EcRNAP subunits α,β,β’,ω + σ factor + catabolite gene activator + DNA<br /> | ||
**[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | **[[4s20]] - EcRNAP subunits α,β,β’,ω + σ factor + RAPA + DNA<br /> | ||
| - | **[[5tbz]] - EcRNAP subunits α,β,β’ + NusG – Cryo EM<br /> | ||
**[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br /> | **[[6c6u]] - EcRNAP subunits α,β,β’,ω + NusG + DNA – Cryo EM<br /> | ||
**[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | **[[6c6t]], [[6c6s]] - EcRNAP subunits α,β,β’,ω + RFAH + DNA – Cryo EM<br /> | ||
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**[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | **[[6flq]] - EcRNAP subunits α,β,β’,ω + NusA + DNA + RNA – Cryo EM<br /> | ||
**[[6alg]] - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM<br /> | **[[6alg]] - EcRNAP subunits α,β,β’,ω + NUN + DNA + RNA – Cryo EM<br /> | ||
| - | **[[6fbv]] - MtuRNAP subunits α,β,β’,ω + σ factor – single particle EM<br /> | ||
**[[5uha]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> | **[[5uha]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA <br /> | ||
**[[5uh9]], [[5uh8]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | **[[5uh9]], [[5uh8]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA <br /> | ||
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**[[5uhd]], [[5uhb]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | **[[5uhd]], [[5uhb]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + antibiotic<br /> | ||
**[[5uhf]], [[5uhe]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor<br /> | **[[5uhf]], [[5uhe]] - MtuRNAP subunits α,β,β’,ω + σ factor + DNA + RNA + inhibitor<br /> | ||
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| - | **[[3ihq]], [[1z3e]], [[3gfk]] - BsRNAP subunit α + regulatory protein SPX | ||
| - | **[[1l9u]] - TaRNAP subunits α,β,β’,ω + σ factor<br /> | ||
**[[1l9z]] - TaRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | **[[1l9z]] - TaRNAP subunits α,β,β’,ω + σ factor + DNA<br /> | ||
| - | **[[2jzb]] – RNAP subunit α + NusA transcription elongation factor – ''Yersinia pseudotuberculosis''<br /> | ||
| - | **[[3tbi]] - RNAP subunit β + GP33 – Enterobacteria phage T4<br /> | ||
| - | **[[3lpe ]]- MjRNAP subunit ε’’ + transcription antitermination protein<br /> | ||
*''Prokaryotic DNA-dependent RNAP complex with small molecule'' | *''Prokaryotic DNA-dependent RNAP complex with small molecule'' | ||
Revision as of 09:25, 18 October 2018
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3D Structures of RNA polymerase
Updated on 18-October-2018
References
- ↑ Cramer P, Armache KJ, Baumli S, Benkert S, Brueckner F, Buchen C, Damsma GE, Dengl S, Geiger SR, Jasiak AJ, Jawhari A, Jennebach S, Kamenski T, Kettenberger H, Kuhn CD, Lehmann E, Leike K, Sydow JF, Vannini A. Structure of eukaryotic RNA polymerases. Annu Rev Biophys. 2008;37:337-52. doi: 10.1146/annurev.biophys.37.032807.130008. PMID:18573085 doi:http://dx.doi.org/10.1146/annurev.biophys.37.032807.130008
- ↑ Comai L. Mechanism of RNA polymerase I transcription. Adv Protein Chem. 2004;67:123-55. PMID:14969726 doi:http://dx.doi.org/10.1016/S0065-3233(04)67005-7
- ↑ Hahn S. Structure and mechanism of the RNA polymerase II transcription machinery. Nat Struct Mol Biol. 2004 May;11(5):394-403. PMID:15114340 doi:http://dx.doi.org/10.1038/nsmb763
- ↑ Longo DL, Herbert V. Radioassay for serum and red cell folate. J Lab Clin Med. 1976 Jan;87(1):138-51. PMID:1452
- ↑ Frick DN, Richardson CC. DNA primases. Annu Rev Biochem. 2001;70:39-80. PMID:11395402 doi:http://dx.doi.org/10.1146/annurev.biochem.70.1.39
- ↑ Naue N, Beerbaum M, Bogutzki A, Schmieder P, Curth U. The helicase-binding domain of Escherichia coli DnaG primase interacts with the highly conserved C-terminal region of single-stranded DNA-binding protein. Nucleic Acids Res. 2013 Apr;41(8):4507-17. doi: 10.1093/nar/gkt107. Epub 2013 Feb, 20. PMID:23430154 doi:http://dx.doi.org/10.1093/nar/gkt107
- ↑ Ahlquist P. RNA-dependent RNA polymerases, viruses, and RNA silencing. Science. 2002 May 17;296(5571):1270-3. PMID:12016304 doi:http://dx.doi.org/10.1126/science.1069132
- ↑ Fukushi S, Kojima S, Takai R, Hoshino FB, Oka T, Takeda N, Katayama K, Kageyama T. Poly(A)- and primer-independent RNA polymerase of Norovirus. J Virol. 2004 Apr;78(8):3889-96. PMID:15047805
- Created with the participation of Craig T Martin.
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