2rku

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:2rku.jpg|left|200px]]
[[Image:2rku.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 2rku |SIZE=350|CAPTION= <scene name='initialview01'>2rku</scene>, resolution 1.950&Aring;
+
The line below this paragraph, containing "STRUCTURE_2rku", creates the "Structure Box" on the page.
-
|SITE= <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+A+501'>AC1</scene>, <scene name='pdbsite=AC2:R78+Binding+Site+For+Residue+A+500'>AC2</scene>, <scene name='pdbsite=AC3:Tla+Binding+Site+For+Residue+A+502'>AC3</scene>, <scene name='pdbsite=AC4:Tla+Binding+Site+For+Residue+A+504'>AC4</scene>, <scene name='pdbsite=AC5:Srt+Binding+Site+For+Residue+A+505'>AC5</scene>, <scene name='pdbsite=AC6:Srt+Binding+Site+For+Residue+A+507'>AC6</scene> and <scene name='pdbsite=AC7:Tar+Binding+Site+For+Residue+A+503'>AC7</scene>
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=R78:4-{[(7R)-8-CYCLOPENTYL-7-ETHYL-5-METHYL-6-OXO-5,6,7,8-TETRAHYDROPTERIDIN-2-YL]AMINO}-3-METHOXY-N-(1-METHYLPIPERIDIN-4-YL)BENZAMIDE'>R78</scene>, <scene name='pdbligand=SRT:S,R+MESO-TARTARIC+ACID'>SRT</scene>, <scene name='pdbligand=TAR:D(-)-TARTARIC+ACID'>TAR</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Polo_kinase Polo kinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.7.11.21 2.7.11.21] </span>
+
or leave the SCENE parameter empty for the default display.
-
|GENE= PLK1, PLK ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
+
-->
-
|DOMAIN=
+
{{STRUCTURE_2rku| PDB=2rku | SCENE= }}
-
|RELATEDENTRY=
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2rku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2rku OCA], [http://www.ebi.ac.uk/pdbsum/2rku PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2rku RCSB]</span>
+
-
}}
+
'''Structure of PLK1 in complex with BI2536'''
'''Structure of PLK1 in complex with BI2536'''
Line 30: Line 27:
[[Category: Kothe, M.]]
[[Category: Kothe, M.]]
[[Category: Low, S.]]
[[Category: Low, S.]]
-
[[Category: atp-binding]]
+
[[Category: Atp-binding]]
-
[[Category: kinase]]
+
[[Category: Kinase]]
-
[[Category: nucleotide-binding]]
+
[[Category: Nucleotide-binding]]
-
[[Category: nucleus]]
+
[[Category: Nucleus]]
-
[[Category: phosphorylation]]
+
[[Category: Phosphorylation]]
-
[[Category: polo-like kinase]]
+
[[Category: Polo-like kinase]]
-
[[Category: selectivity residue]]
+
[[Category: Selectivity residue]]
-
[[Category: serine/threonine-protein kinase]]
+
[[Category: Serine/threonine-protein kinase]]
-
[[Category: structure based drug design]]
+
[[Category: Structure based drug design]]
-
[[Category: structure of plk1]]
+
[[Category: Structure of plk1]]
-
[[Category: transferase]]
+
[[Category: Transferase]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 17:06:26 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:01:34 2008''
+

Revision as of 14:06, 4 May 2008

Image:2rku.jpg

Template:STRUCTURE 2rku

Structure of PLK1 in complex with BI2536


Overview

Polo-like kinase 1 is an important regulator of cell cycle progression whose over-expression is often associated with oncogenesis. Polo-like kinase 1 hence represents an attractive target for cancer intervention. BI 2536 (Boehringer Ingelheim, Ingelheim, Germany), a Polo-like kinase 1 inhibitor currently in clinical trials, exhibits nanomolar potency against Polo-like kinase isoforms and high selectivity against other kinases. We have previously published the crystal structures of the Polo-like kinase 1 domain in complex with AMPPNP and an Aurora A inhibitor. In this work, we present the co-crystal structure of Polo-like kinase 1 with BI 2536. The structure, in combination with selectivity data for BI 2536 and related compounds, illustrates important features for potency and selectivity. In particular, we show that the methoxy group of BI 2536 is an important specificity determinant against non-Polo-like kinases by taking advantage of a small pocket generated by Leu 132 in the hinge region of Polo-like kinase 1. The work presented here provides a framework for structure-based drug design of Polo-like kinase 1-specific inhibitors.

About this Structure

2RKU is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Selectivity-determining residues in Plk1., Kothe M, Kohls D, Low S, Coli R, Rennie GR, Feru F, Kuhn C, Ding YH, Chem Biol Drug Des. 2007 Dec;70(6):540-6. Epub 2007 Nov 13. PMID:18005335 Page seeded by OCA on Sun May 4 17:06:26 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2rku"
Personal tools