6fde

From Proteopedia

(Difference between revisions)

Current revision

Crystal Structure of the HHD2 Domain of Whirlin : 3-helix conformation

Structural highlights

6fde is a 1 chain structure with sequence from Mus musculus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.85Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

WHRN_MOUSE Defects in Whrn are the cause of the phenotype whirler (wi). Mutants are characterized by deafness due to malformation of the cochlear inner and outer hair cells and by circling behavior. Stereocilia are shorter and wider than in wild-type animals and there is a decrease in the number of actin filaments in inner and outer hair cells. The number of outer hair cell stereocilia is reduced with increased spacing between them.^[1] ^[2] ^[3]

Function

WHRN_MOUSE Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear.^[4]

Publication Abstract from PubMed

Whirlin is a protein essential to sensory neurons. Its defects are responsible for non-syndromic deafness or for the Usher syndrome, a condition associating congenital deafness and progressive blindness. This large multidomain scaffolding protein is expressed in three isoforms with different functions and localizations in stereocilia bundles of hearing hair cells or in the connector cilia of photoreceptor cells. The HHD2 domain of whirlin is the only domain shared by all isoforms, but its function remains unknown. In this article, we report its crystal structure in two distinct conformations, a monomeric five-helix bundle, similar to the known structure of other HHD domains, and a three-helix bundle organized as a swapped dimer. Most of the hydrophobic contacts and electrostatic interactions that maintain the globular monomeric form are conserved at the protomer interface of the dimer. NMR experiments revealed that the five-helix conformation is predominant in solution, but exhibits increased dynamics on one face encompassing the hinge loops. Using NMR and SAXS, we also show that HHD2 does not interact with its preceding domains. Our findings suggest that structural plasticity might play a role in the function of the HHD2 domain. This article is protected by copyright. All rights reserved.

Structural plasticity of the HHD2 domain of whirlin.,Delhommel F, Cordier F, Saul F, Chataigner L, Haouz A, Wolff N FEBS J. 2018 Jul 27. doi: 10.1111/febs.14614. PMID:30053338^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Holme RH, Kiernan BW, Brown SD, Steel KP. Elongation of hair cell stereocilia is defective in the mouse mutant whirler. J Comp Neurol. 2002 Aug 12;450(1):94-102. PMID:12124769 doi:http://dx.doi.org/10.1002/cne.10301
↑ Mburu P, Mustapha M, Varela A, Weil D, El-Amraoui A, Holme RH, Rump A, Hardisty RE, Blanchard S, Coimbra RS, Perfettini I, Parkinson N, Mallon AM, Glenister P, Rogers MJ, Paige AJ, Moir L, Clay J, Rosenthal A, Liu XZ, Blanco G, Steel KP, Petit C, Brown SD. Defects in whirlin, a PDZ domain molecule involved in stereocilia elongation, cause deafness in the whirler mouse and families with DFNB31. Nat Genet. 2003 Aug;34(4):421-8. PMID:12833159 doi:10.1038/ng1208
↑ Mogensen MM, Rzadzinska A, Steel KP. The deaf mouse mutant whirler suggests a role for whirlin in actin filament dynamics and stereocilia development. Cell Motil Cytoskeleton. 2007 Jul;64(7):496-508. PMID:17326148 doi:http://dx.doi.org/10.1002/cm.20199
↑ Kikkawa Y, Mburu P, Morse S, Kominami R, Townsend S, Brown SD. Mutant analysis reveals whirlin as a dynamic organizer in the growing hair cell stereocilium. Hum Mol Genet. 2005 Feb 1;14(3):391-400. Epub 2004 Dec 8. PMID:15590699 doi:http://dx.doi.org/ddi035
↑ Delhommel F, Cordier F, Saul F, Chataigner L, Haouz A, Wolff N. Structural plasticity of the HHD2 domain of whirlin. FEBS J. 2018 Jul 27. doi: 10.1111/febs.14614. PMID:30053338 doi:http://dx.doi.org/10.1111/febs.14614

1 Structural highlights
2 Disease
3 Function
4 Publication Abstract from PubMed
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6fde"

@@ Line 1: / Line 1: @@
 ==Crystal Structure of the HHD2 Domain of Whirlin : 3-helix conformation==
-<StructureSection load='6fde' size='340' side='right' caption='[[6fde]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
+<StructureSection load='6fde' size='340' side='right'caption='[[6fde]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6fde]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FDE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6FDE FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6fde]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6FDE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6FDE FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6fdd|6fdd]]</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.85&#8491;</td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Whrn, Dfnb31, Kiaa1526 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6fde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fde OCA], [https://pdbe.org/6fde PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6fde RCSB], [https://www.ebi.ac.uk/pdbsum/6fde PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6fde ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6fde FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6fde OCA], [http://pdbe.org/6fde PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6fde RCSB], [http://www.ebi.ac.uk/pdbsum/6fde PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6fde ProSAT]</span></td></tr>
 </table>
 == Disease ==
-[[http://www.uniprot.org/uniprot/WHRN_MOUSE WHRN_MOUSE]] Defects in Whrn are the cause of the phenotype whirler (wi). Mutants are characterized by deafness due to malformation of the cochlear inner and outer hair cells and by circling behavior. Stereocilia are shorter and wider than in wild-type animals and there is a decrease in the number of actin filaments in inner and outer hair cells. The number of outer hair cell stereocilia is reduced with increased spacing between them.<ref>PMID:12124769</ref> <ref>PMID:12833159</ref> <ref>PMID:17326148</ref>
+[https://www.uniprot.org/uniprot/WHRN_MOUSE WHRN_MOUSE] Defects in Whrn are the cause of the phenotype whirler (wi). Mutants are characterized by deafness due to malformation of the cochlear inner and outer hair cells and by circling behavior. Stereocilia are shorter and wider than in wild-type animals and there is a decrease in the number of actin filaments in inner and outer hair cells. The number of outer hair cell stereocilia is reduced with increased spacing between them.<ref>PMID:12124769</ref> <ref>PMID:12833159</ref> <ref>PMID:17326148</ref>
 == Function ==
-[[http://www.uniprot.org/uniprot/WHRN_MOUSE WHRN_MOUSE]] Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear.<ref>PMID:15590699</ref>
+[https://www.uniprot.org/uniprot/WHRN_MOUSE WHRN_MOUSE] Necessary for elongation and maintenance of inner and outer hair cell stereocilia in the organ of Corti in the inner ear.<ref>PMID:15590699</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 24: @@
 __TOC__
 </StructureSection>
-[[Category: Lk3 transgenic mice]]
+[[Category: Large Structures]]
-[[Category: Cordier, F]]
+[[Category: Mus musculus]]
-[[Category: Delhommel, F]]
+[[Category: Cordier F]]
-[[Category: Haouz, A]]
+[[Category: Delhommel F]]
-[[Category: Saul, F]]
+[[Category: Haouz A]]
-[[Category: Wolff, N]]
+[[Category: Saul F]]
-[[Category: Deafness]]
+[[Category: Wolff N]]
-[[Category: Hearing]]
-[[Category: Scaffold protein]]
-[[Category: Structural protein]]
-[[Category: Usher syndrome]]

6fde

From Proteopedia

Current revision

Crystal Structure of the HHD2 Domain of Whirlin : 3-helix conformation

Structural highlights

Disease

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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