This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3cqv
From Proteopedia
| Line 1: | Line 1: | ||
==Crystal structure of Reverb beta in complex with heme== | ==Crystal structure of Reverb beta in complex with heme== | ||
| - | <StructureSection load='3cqv' size='340' side='right' caption='[[3cqv]], [[Resolution|resolution]] 1.90Å' scene=''> | + | <StructureSection load='3cqv' size='340' side='right'caption='[[3cqv]], [[Resolution|resolution]] 1.90Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3cqv]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3cqv]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CQV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CQV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr> |
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | <tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | ||
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NR1D2 ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NR1D2 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cqv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cqv OCA], [https://pdbe.org/3cqv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cqv RCSB], [https://www.ebi.ac.uk/pdbsum/3cqv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cqv ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/NR1D2_HUMAN NR1D2_HUMAN]] Binds to the sequences 5'-AATGTAGGTCA-3' and 5'-ATAACTAGGTCA-3'. Acts as a potent competitive repressor of ROR alpha function (By similarity). |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 35: | Line 35: | ||
</StructureSection> | </StructureSection> | ||
[[Category: Homo sapiens]] | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
[[Category: Arrowsmith, C H]] | [[Category: Arrowsmith, C H]] | ||
[[Category: Botchkarev, A]] | [[Category: Botchkarev, A]] | ||
Current revision
Crystal structure of Reverb beta in complex with heme
| |||||||||||
Categories: Homo sapiens | Large Structures | Arrowsmith, C H | Botchkarev, A | Bountra, C | Cui, H | Dong, A | Edwards, A | Krause, H | Pardee, K I | Reinking, J | Structural genomic | Savchenko, A | Schuetz, A | Weigelt, J | Xu, X | Zhang, R | Dna-binding | Heme | Metal-binding | Nr1d2 | Nuclear receptor | Nucleus | Repressor | Reverb beta | Sgc | Transcription | Transcription regulation | Zinc | Zinc-finger

