6inz

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Current revision (09:47, 22 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6inz is ON HOLD until Paper Publication
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==Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide==
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<StructureSection load='6inz' size='340' side='right'caption='[[6inz]], [[Resolution|resolution]] 2.29&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6inz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptobacillus_moniliformis_DSM_12112 Streptobacillus moniliformis DSM 12112]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6INZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6INZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.289&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GCD:4,5-DEHYDRO-D-GLUCURONIC+ACID'>GCD</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6inz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6inz OCA], [https://pdbe.org/6inz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6inz RCSB], [https://www.ebi.ac.uk/pdbsum/6inz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6inz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/D1AWE0_STRM9 D1AWE0_STRM9]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Glycosaminoglycans (GAGs) such as hyaluronan and chondroitin in animal extracellular matrices contain disaccharide-repeating units. In a Gram-negative pathogenic Streptobacillus moniliformis, which belongs to Fusobacteria phylum and resides in rodent oral cavities, the solute-binding protein (Smon0123)-dependent ATP-binding cassette transporter imports unsaturated hyaluronan/chondroitin disaccharides into the cytoplasm after GAG lyase-dependent depolymerization. Here we show substrate recognition of unsaturated hyaluronan disaccharide by Smon0123. Moreover, Smon0123 exhibited no affinity for unsaturated chondroitin disaccharides containing three sulfate groups, distinct from non-sulfated, mono-sulfated, and di-sulfated chondroitin disaccharides previously identified as substrates. Crystal structure of Smon0123 with unsaturated hyaluronan disaccharide demonstrates that several residues, including Trp284 and Glu410, are crucial for binding to unsaturated hyaluronan/chondroitin disaccharides, whereas arrangements of water molecules at binding sites are found to be substrate dependent through comparison with substrate-bound structures determined previously. These residues are well conserved in Smon0123-like proteins of fusobacteria, and probably facilitate the fusobacterial residence in hyaluronan-rich oral cavities.
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Authors:
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Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.,Oiki S, Sato M, Mikami B, Murata K, Hashimoto W Biosci Biotechnol Biochem. 2019 Oct;83(10):1946-1954. doi: , 10.1080/09168451.2019.1630250. Epub 2019 Jun 16. PMID:31204616<ref>PMID:31204616</ref>
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Description:
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6inz" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Streptobacillus moniliformis DSM 12112]]
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[[Category: Hashimoto W]]
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[[Category: Mikami B]]
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[[Category: Murata K]]
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[[Category: Oiki S]]

Current revision

Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide

PDB ID 6inz

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