6hzx
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Protein-aromatic foldamer complex crystal structure== | |
+ | <StructureSection load='6hzx' size='340' side='right'caption='[[6hzx]], [[Resolution|resolution]] 2.91Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6hzx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6HZX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6HZX FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.91Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=6H0:~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL]METHYL]-4-SULFAMOYL-BENZAMIDE'>6H0</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=QDD:2-(8-azanyl-2-methanoyl-quinolin-4-yl)ethanoic+acid'>QDD</scene>, <scene name='pdbligand=QUK:8-AZANYL-4-(3-AZANYLPROPOXY)QUINOLINE-2-CARBOXYLIC+ACID'>QUK</scene>, <scene name='pdbligand=QVE:8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOXY)QUINOLINE-2-CARBOXYLIC+ACID'>QVE</scene>, <scene name='pdbligand=QVS:8-AZANYL-4-OXIDANYL-QUINOLINE-2-CARBOXYLIC+ACID'>QVS</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>, <scene name='pdbligand=ZY9:6-(aminomethyl)pyridine-2-carboxylic+acid'>ZY9</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6hzx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6hzx OCA], [https://pdbe.org/6hzx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6hzx RCSB], [https://www.ebi.ac.uk/pdbsum/6hzx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6hzx ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/CAH2_HUMAN CAH2_HUMAN] Defects in CA2 are the cause of osteopetrosis autosomal recessive type 3 (OPTB3) [MIM:[https://omim.org/entry/259730 259730]; also known as osteopetrosis with renal tubular acidosis, carbonic anhydrase II deficiency syndrome, Guibaud-Vainsel syndrome or marble brain disease. Osteopetrosis is a rare genetic disease characterized by abnormally dense bone, due to defective resorption of immature bone. The disorder occurs in two forms: a severe autosomal recessive form occurring in utero, infancy, or childhood, and a benign autosomal dominant form occurring in adolescence or adulthood. Autosomal recessive osteopetrosis is usually associated with normal or elevated amount of non-functional osteoclasts. OPTB3 is associated with renal tubular acidosis, cerebral calcification (marble brain disease) and in some cases with mental retardation.<ref>PMID:1928091</ref> <ref>PMID:1542674</ref> <ref>PMID:8834238</ref> <ref>PMID:9143915</ref> <ref>PMID:15300855</ref> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/CAH2_HUMAN CAH2_HUMAN] Essential for bone resorption and osteoclast differentiation (By similarity). Reversible hydration of carbon dioxide. Can hydrate cyanamide to urea. Involved in the regulation of fluid secretion into the anterior chamber of the eye.<ref>PMID:10550681</ref> <ref>PMID:11831900</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The development of large synthetic ligands could be useful to target the sizeable surface areas involved in protein-protein interactions. Herein, we present long helical aromatic oligoamide foldamers bearing proteinogenic side chains that cover up to 450 A(2) of the human carbonic anhydrase II (HCA) surface. The foldamers are composed of aminoquinolinecarboxylic acids bearing proteinogenic side chains and of more flexible aminomethyl-pyridinecarboxylic acids that enhance helix handedness dynamics. Crystal structures of HCA-foldamer complexes were obtained with a 9- and a 14-mer both showing extensive protein-foldamer hydrophobic contacts. In addition, foldamer-foldamer interactions seem to be prevalent in the crystal packing, leading to the peculiar formation of an HCA superhelix wound around a rod of stacked foldamers. Solution studies confirm the positioning of the foldamer at the protein surface as well as a dimerization of the complexes. | ||
- | + | Structure Elucidation of Helical Aromatic Foldamer-Protein Complexes with Large Contact Surface Areas.,Reddy PS, Langlois d'Estaintot B, Granier T, Mackereth CD, Fischer L, Huc I Chemistry. 2019 Aug 22;25(47):11042-11047. doi: 10.1002/chem.201902942. Epub 2019 , Jul 30. PMID:31257622<ref>PMID:31257622</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6hzx" style="background-color:#fffaf0;"></div> |
- | [[Category: Granier | + | |
- | [[Category: Huc | + | ==See Also== |
- | [[Category: | + | *[[Carbonic anhydrase 3D structures|Carbonic anhydrase 3D structures]] |
- | [[Category: | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Homo sapiens]] | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Fischer L]] | ||
+ | [[Category: Granier T]] | ||
+ | [[Category: Huc I]] | ||
+ | [[Category: Langlois d'Estaintot B]] | ||
+ | [[Category: Post S]] |
Revision as of 10:25, 15 November 2023
Protein-aromatic foldamer complex crystal structure
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