6ipw
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of CqsB2 from Streptomyces exfoliatus in complex with the product, 1-(2-hydroxypropyl)-2-methyl-carbazole-3,4-dione== | |
| + | <StructureSection load='6ipw' size='340' side='right'caption='[[6ipw]], [[Resolution|resolution]] 2.10Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ipw]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6IPW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6IPW FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AO6:2-methyl-1-[(2R)-2-oxidanylpropyl]-9H-carbazole-3,4-dione'>AO6</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6ipw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ipw OCA], [http://pdbe.org/6ipw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6ipw RCSB], [http://www.ebi.ac.uk/pdbsum/6ipw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6ipw ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Carquinostatin A (CQS), a potent neuroprotective substance, is a unique carbazole alkaloid with both an ortho-quinone function and an isoprenoid moiety. We identified the entire gene cluster responsible for CQS biosynthesis in Streptomyces exfoliatus through heterologous production of CQS and gene deletion. Biochemical characterization of seven CQS biosynthetic gene products (CqsB1-7) established the total biosynthetic pathway of CQS. Reconstitution of CqsB1 and CqsB2 showed that the synthesis of the carbazole skeleton involves CqsB1-catalyzed decarboxylative condensation of an alpha-hydroxyl-beta-keto acid intermediate with 3-hydroxybutyryl-ACP followed by CqsB2-catalyzed oxidative cyclization. Based on crystal structures and mutagenesis-based biochemical assays, a detailed mechanism for the unique deprotonation-initiated cyclization catalyzed by CqsB2 is proposed. Finally, analysis of the substrate specificity of the biosynthetic enzymes led to the production of novel carbazoles. | ||
| - | + | An Unprecedented Cyclization Mechanism in the Biosynthesis of Carbazole Alkaloids in Streptomyces.,Kobayashi M, Tomita T, Shin-Ya K, Nishiyama M, Kuzuyama T Angew Chem Int Ed Engl. 2019 Sep 16;58(38):13349-13353. doi:, 10.1002/anie.201906864. Epub 2019 Aug 13. PMID:31350791<ref>PMID:31350791</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| + | <div class="pdbe-citations 6ipw" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Kobayashi, M]] | ||
| + | [[Category: Kuzuyama, T]] | ||
| + | [[Category: Nishiyama, M]] | ||
| + | [[Category: Tomita, T]] | ||
| + | [[Category: Biosynthetic protein]] | ||
| + | [[Category: Carbazole biosynthesis]] | ||
| + | [[Category: Polyketide aromatase/cyclase]] | ||
Revision as of 05:50, 16 October 2019
Crystal structure of CqsB2 from Streptomyces exfoliatus in complex with the product, 1-(2-hydroxypropyl)-2-methyl-carbazole-3,4-dione
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