This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3edf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
==Structural base for cyclodextrin hydrolysis==
==Structural base for cyclodextrin hydrolysis==
-
<StructureSection load='3edf' size='340' side='right' caption='[[3edf]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='3edf' size='340' side='right'caption='[[3edf]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3edf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Flavobacterium_sp._92 Flavobacterium sp. 92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EDF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3edf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacterium_sp._92 Flavobacterium sp. 92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EDF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACX:ALPHA-CYCLODEXTRIN+(CYCLOHEXA-AMYLOSE)'>ACX</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=CE6:CELLOHEXAOSE'>CE6</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3edd|3edd]], [[3ede|3ede]], [[3edj|3edj]], [[3edk|3edk]]</td></tr>
+
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3edd|3edd]], [[3ede|3ede]], [[3edj|3edj]], [[3edk|3edk]]</div></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cdase ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197856 Flavobacterium sp. 92])</td></tr>
+
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">cdase ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197856 Flavobacterium sp. 92])</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Cyclomaltodextrinase Cyclomaltodextrinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.54 3.2.1.54] </span></td></tr>
+
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Cyclomaltodextrinase Cyclomaltodextrinase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.54 3.2.1.54] </span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3edf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3edf OCA], [http://pdbe.org/3edf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3edf RCSB], [http://www.ebi.ac.uk/pdbsum/3edf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3edf ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3edf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3edf OCA], [https://pdbe.org/3edf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3edf RCSB], [https://www.ebi.ac.uk/pdbsum/3edf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3edf ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 35: Line 35:
[[Category: Cyclomaltodextrinase]]
[[Category: Cyclomaltodextrinase]]
[[Category: Flavobacterium sp. 92]]
[[Category: Flavobacterium sp. 92]]
 +
[[Category: Large Structures]]
[[Category: Buedenbender, S]]
[[Category: Buedenbender, S]]
[[Category: Schulz, G E]]
[[Category: Schulz, G E]]

Revision as of 07:35, 10 November 2021

Structural base for cyclodextrin hydrolysis

PDB ID 3edf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools