2zg3

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[[Image:2zg3.jpg|left|200px]]
[[Image:2zg3.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 2zg3 |SIZE=350|CAPTION= <scene name='initialview01'>2zg3</scene>, resolution 3.0&Aring;
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The line below this paragraph, containing "STRUCTURE_2zg3", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:Sia+Binding+Site+For+Residue+A+241'>AC1</scene>, <scene name='pdbsite=AC2:Gal+Binding+Site+For+Residue+A+242'>AC2</scene> and <scene name='pdbsite=AC3:Bgc+Binding+Site+For+Residue+A+243'>AC3</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=SIA:O-SIALIC+ACID'>SIA</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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|GENE= SIGLEC5 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
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-->
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|DOMAIN=
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{{STRUCTURE_2zg3| PDB=2zg3 | SCENE= }}
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|RELATEDENTRY=[[1o7s|1O7S]], [[1qfo|1QFO]], [[2zg1|2ZG1]], [[2zg2|2ZG2]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zg3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zg3 OCA], [http://www.ebi.ac.uk/pdbsum/2zg3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2zg3 RCSB]</span>
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}}
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'''Crystal Structure of Two N-terminal Domains of Native Siglec-5 in Complex with 3'-Sialyllactose'''
'''Crystal Structure of Two N-terminal Domains of Native Siglec-5 in Complex with 3'-Sialyllactose'''
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[[Category: Zhuravleva, M A.]]
[[Category: Zhuravleva, M A.]]
[[Category: 3'-sialyllactose complex]]
[[Category: 3'-sialyllactose complex]]
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[[Category: c2-set]]
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[[Category: C2-set]]
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[[Category: cell adhesion]]
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[[Category: Cell adhesion]]
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[[Category: glycoprotein]]
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[[Category: Glycoprotein]]
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[[Category: ig-like domain]]
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[[Category: Ig-like domain]]
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[[Category: immune system/carbohydrate binding protein complex]]
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[[Category: Immune system/carbohydrate binding protein complex]]
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[[Category: immunoglobulin domain]]
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[[Category: Immunoglobulin domain]]
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[[Category: lectin]]
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[[Category: Lectin]]
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[[Category: membrane]]
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[[Category: Membrane]]
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[[Category: polymorphism]]
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[[Category: Polymorphism]]
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[[Category: sialic acid]]
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[[Category: Sialic acid]]
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[[Category: siglec-5 inhibitory receptor]]
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[[Category: Siglec-5 inhibitory receptor]]
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[[Category: transmembrane]]
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[[Category: Transmembrane]]
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[[Category: two-domain structure]]
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[[Category: Two-domain structure]]
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[[Category: v-set]]
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[[Category: V-set]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 20:12:20 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 05:20:53 2008''
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Revision as of 17:12, 4 May 2008

Image:2zg3.jpg

Template:STRUCTURE 2zg3

Crystal Structure of Two N-terminal Domains of Native Siglec-5 in Complex with 3'-Sialyllactose


Overview

Sialic acid (Sia) Ig-like binding lectins are important mediators of recognition and signaling events among myeloid cells. To investigate the molecular mechanism underlying sialic acid Ig-like lectin (Siglec) functions, we determined the crystal structure of the two N-terminal extracellular domains of human myeloid cell inhibitory receptor Siglec-5 (CD170) and its complexes with two sialylated carbohydrates. The native structure revealed an unusual conformation of the CC' ligand specificity loop and a unique interdomain disulfide bond. The alpha(2,3)- and alpha(2,6)-sialyllactose complexed structures showed a conserved Sia recognition motif that involves both Arg124 and a portion of the G-strand in the V-set domain forming beta-sheet-like hydrogen bonds with the glycerol side chain of the Sia. Only few protein contacts to the subterminal sugars are observed and mediated by the highly variable GG' linker and CC' loop. These structural observations, in conjunction with surface plasmon resonance binding assays, provide mechanistic insights into linkage-dependent Siglec carbohydrate recognition and suggest that Siglec-5 and other CD33-related Siglec receptors are more promiscuous in sialoglycan recognition than previously understood.

About this Structure

2ZG3 is a Single protein structure of sequence from Homo sapiens. Full crystallographic information is available from OCA.

Reference

Structural implications of Siglec-5-mediated sialoglycan recognition., Zhuravleva MA, Trandem K, Sun PD, J Mol Biol. 2008 Jan 11;375(2):437-47. Epub 2007 Oct 11. PMID:18022638 Page seeded by OCA on Sun May 4 20:12:20 2008

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