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3k2j

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Current revision (16:07, 1 November 2023) (edit) (undo)
 
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==Crystal Structure of the 3rd Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)==
==Crystal Structure of the 3rd Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)==
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<StructureSection load='3k2j' size='340' side='right' caption='[[3k2j]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
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<StructureSection load='3k2j' size='340' side='right'caption='[[3k2j]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3k2j]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3K2J FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3k2j]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K2J FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PB1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3k2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2j OCA], [http://pdbe.org/3k2j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3k2j RCSB], [http://www.ebi.ac.uk/pdbsum/3k2j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2j ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k2j OCA], [https://pdbe.org/3k2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k2j RCSB], [https://www.ebi.ac.uk/pdbsum/3k2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k2j ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/PB1_HUMAN PB1_HUMAN]] Defects in PBRM1 are a cause of renal cell carcinoma (RCC) [MIM:[http://omim.org/entry/144700 144700]]. It is a heterogeneous group of sporadic or hereditary carcinoma derived from cells of the proximal renal tubular epithelium. It is subclassified into clear cell renal carcinoma (non-papillary carcinoma), papillary renal cell carcinoma, chromophobe renal cell carcinoma, collecting duct carcinoma with medullary carcinoma of the kidney, and unclassified renal cell carcinoma.<ref>PMID:21248752</ref>
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[https://www.uniprot.org/uniprot/PB1_HUMAN PB1_HUMAN] Defects in PBRM1 are a cause of renal cell carcinoma (RCC) [MIM:[https://omim.org/entry/144700 144700]. It is a heterogeneous group of sporadic or hereditary carcinoma derived from cells of the proximal renal tubular epithelium. It is subclassified into clear cell renal carcinoma (non-papillary carcinoma), papillary renal cell carcinoma, chromophobe renal cell carcinoma, collecting duct carcinoma with medullary carcinoma of the kidney, and unclassified renal cell carcinoma.<ref>PMID:21248752</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/PB1_HUMAN PB1_HUMAN]] Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Acts as a negative regulator of cell proliferation.<ref>PMID:21248752</ref>
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[https://www.uniprot.org/uniprot/PB1_HUMAN PB1_HUMAN] Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Acts as a negative regulator of cell proliferation.<ref>PMID:21248752</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
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[[Category: Arrowsmith, C H]]
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[[Category: Large Structures]]
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[[Category: Bountra, C]]
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[[Category: Arrowsmith CH]]
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[[Category: Chaikuad, A]]
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[[Category: Bountra C]]
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[[Category: Delft, F von]]
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[[Category: Chaikuad A]]
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[[Category: Edwards, A]]
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[[Category: Edwards A]]
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[[Category: Filippakopoulos, P]]
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[[Category: Filippakopoulos P]]
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[[Category: Keates, T]]
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[[Category: Keates T]]
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[[Category: Knapp, S]]
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[[Category: Knapp S]]
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[[Category: Krojer, T]]
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[[Category: Krojer T]]
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[[Category: Picaud, S]]
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[[Category: Picaud S]]
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[[Category: Pike, A C.W]]
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[[Category: Pike ACW]]
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[[Category: Structural genomic]]
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[[Category: Sethi R]]
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[[Category: Sethi, R]]
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[[Category: Weigelt J]]
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[[Category: Weigelt, J]]
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[[Category: Von Delft F]]
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[[Category: Baf180]]
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[[Category: Brg1-associated factor 180]]
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[[Category: Pb1]]
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[[Category: Pbrm1]]
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[[Category: Polybromo 1 isoform 1]]
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[[Category: Polybromo01d]]
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[[Category: Sgc]]
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[[Category: Transcription]]
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Current revision

Crystal Structure of the 3rd Bromodomain of Human Poly-bromodomain containing protein 1 (PB1)

PDB ID 3k2j

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