This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kbm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:13, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Room Temperature X-ray structure of D-Xylose Isomerase complexed with 2Cd(2+) co-factors and d12-D-alpha-glucose in the cyclic form==
==Room Temperature X-ray structure of D-Xylose Isomerase complexed with 2Cd(2+) co-factors and d12-D-alpha-glucose in the cyclic form==
-
<StructureSection load='3kbm' size='340' side='right' caption='[[3kbm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3kbm' size='340' side='right'caption='[[3kbm]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kbm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_rubiginosus"_preobrazhenskaya_et_al._in_gauze_et_al._1957 "actinomyces rubiginosus" preobrazhenskaya et al. in gauze et al. 1957]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KBM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KBM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kbm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_rubiginosus Streptomyces rubiginosus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KBM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KBM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kbj|3kbj]], [[3kbn|3kbn]], [[3kbs|3kbs]], [[3kbv|3kbv]], [[3kbw|3kbw]], [[3kcj|3kcj]], [[3kcl|3kcl]], [[3kco|3kco]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CD:CADMIUM+ION'>CD</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">xylA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1929 "Actinomyces rubiginosus" Preobrazhenskaya et al. in Gauze et al. 1957])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kbm OCA], [https://pdbe.org/3kbm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kbm RCSB], [https://www.ebi.ac.uk/pdbsum/3kbm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kbm ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Xylose_isomerase Xylose isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.5 5.3.1.5] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kbm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kbm OCA], [http://pdbe.org/3kbm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kbm RCSB], [http://www.ebi.ac.uk/pdbsum/3kbm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kbm ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU]] Involved in D-xylose catabolism.
+
[https://www.uniprot.org/uniprot/XYLA_STRRU XYLA_STRRU] Involved in D-xylose catabolism.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 33: Line 31:
==See Also==
==See Also==
-
*[[D-xylose isomerase|D-xylose isomerase]]
+
*[[D-xylose isomerase 3D structures|D-xylose isomerase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Actinomyces rubiginosus preobrazhenskaya et al. in gauze et al. 1957]]
+
[[Category: Large Structures]]
-
[[Category: Xylose isomerase]]
+
[[Category: Streptomyces rubiginosus]]
-
[[Category: Hanson, L]]
+
[[Category: Hanson L]]
-
[[Category: Kovalevsky, A Y]]
+
[[Category: Kovalevsky AY]]
-
[[Category: Langan, P]]
+
[[Category: Langan P]]
-
[[Category: Carbohydrate metabolism]]
+
-
[[Category: Cyclic glucose]]
+
-
[[Category: Isomerase]]
+
-
[[Category: Metal-binding]]
+
-
[[Category: Pentose shunt]]
+
-
[[Category: Xylose metabolism]]
+

Current revision

Room Temperature X-ray structure of D-Xylose Isomerase complexed with 2Cd(2+) co-factors and d12-D-alpha-glucose in the cyclic form

PDB ID 3kbm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kbm"
Personal tools