3k1r
From Proteopedia
(Difference between revisions)
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==Structure of harmonin NPDZ1 in complex with the SAM-PBM of Sans== | ==Structure of harmonin NPDZ1 in complex with the SAM-PBM of Sans== | ||
- | <StructureSection load='3k1r' size='340' side='right' caption='[[3k1r]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3k1r' size='340' side='right'caption='[[3k1r]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[3k1r]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3k1r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3K1R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3K1R FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2kbq|2kbq]], [[2kbr|2kbr]]</td></tr> | + | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2kbq|2kbq]], [[2kbr|2kbr]]</div></td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">USH1C ([ | + | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">USH1C ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN]), USH1G ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3k1r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3k1r OCA], [https://pdbe.org/3k1r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3k1r RCSB], [https://www.ebi.ac.uk/pdbsum/3k1r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3k1r ProSAT]</span></td></tr> |
</table> | </table> | ||
== Disease == | == Disease == | ||
- | [[ | + | [[https://www.uniprot.org/uniprot/USH1C_HUMAN USH1C_HUMAN]] Defects in USH1C are the cause of Usher syndrome type 1C (USH1C) [MIM:[https://omim.org/entry/276904 276904]]; also known as Usher syndrome type I Acadian variety. USH is a genetically heterogeneous condition characterized by the association of retinitis pigmentosa and sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1 is characterized by profound congenital sensorineural deafness, absent vestibular function and prepubertal onset of progressive retinitis pigmentosa leading to blindness.<ref>PMID:10973247</ref> Defects in USH1C are the cause of deafness, autosomal recessive, 18A (DFNB18A) [MIM:[https://omim.org/entry/602092 602092]]. A form of sensorineural hearing loss. Sensorineural deafness results from damage to the neural receptors of the inner ear, the nerve pathways to the brain, or the area of the brain that receives sound information.<ref>PMID:12107438</ref> [[https://www.uniprot.org/uniprot/USH1G_HUMAN USH1G_HUMAN]] Defects in USH1G are the cause of Usher syndrome type 1G (USH1G) [MIM:[https://omim.org/entry/606943 606943]]. USH is a genetically heterogeneous condition characterized by the association of retinitis pigmentosa and sensorineural deafness. Age at onset and differences in auditory and vestibular function distinguish Usher syndrome type 1 (USH1), Usher syndrome type 2 (USH2) and Usher syndrome type 3 (USH3). USH1 is characterized by profound congenital sensorineural deafness, absent vestibular function and prepubertal onset of progressive retinitis pigmentosa leading to blindness.<ref>PMID:21709241</ref> <ref>PMID:12588794</ref> <ref>PMID:20142502</ref> <ref>PMID:16283141</ref> |
== Function == | == Function == | ||
- | [[ | + | [[https://www.uniprot.org/uniprot/USH1C_HUMAN USH1C_HUMAN]] Required for normal development and maintenance of cochlear hair cell bundles. Anchoring/scaffolding protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing (By similarity). [[https://www.uniprot.org/uniprot/USH1G_HUMAN USH1G_HUMAN]] Required for normal development and maintenance of cochlear hair cell bundles. Anchoring/scaffolding protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing.<ref>PMID:21709241</ref> <ref>PMID:12588794</ref> |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Human]] | [[Category: Human]] | ||
+ | [[Category: Large Structures]] | ||
[[Category: Pan, L]] | [[Category: Pan, L]] | ||
[[Category: Yan, J]] | [[Category: Yan, J]] |
Revision as of 07:49, 10 November 2021
Structure of harmonin NPDZ1 in complex with the SAM-PBM of Sans
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Categories: Human | Large Structures | Pan, L | Yan, J | Zhang, M | Alternative splicing | Ank repeat | Coiled coil | Deafness | Disease mutation | Hearing | Non-syndromic deafness | Polymorphism | Protein-protein complex | Retinitis pigmentosa | Sensory transduction | Structural protein | Usher syndrome | Vision