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| ==Crystal Structure of the Plasmid pCU1 TraI Relaxase Domain== | | ==Crystal Structure of the Plasmid pCU1 TraI Relaxase Domain== |
- | <StructureSection load='3l57' size='340' side='right' caption='[[3l57]], [[Resolution|resolution]] 2.29Å' scene=''> | + | <StructureSection load='3l57' size='340' side='right'caption='[[3l57]], [[Resolution|resolution]] 2.29Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3l57]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L57 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3L57 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3l57]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3L57 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3L57 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.293Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pMUR050_047, traI ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MN3:MANGANESE+(III)+ION'>MN3</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3l57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l57 OCA], [http://pdbe.org/3l57 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3l57 RCSB], [http://www.ebi.ac.uk/pdbsum/3l57 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3l57 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3l57 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3l57 OCA], [https://pdbe.org/3l57 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3l57 RCSB], [https://www.ebi.ac.uk/pdbsum/3l57 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3l57 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q9X4G2_ECOLX Q9X4G2_ECOLX] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bacillus coli migula 1895]] | + | [[Category: Escherichia coli]] |
- | [[Category: Nash, R P]] | + | [[Category: Large Structures]] |
- | [[Category: Redinbo, M R]] | + | [[Category: Nash RP]] |
- | [[Category: Conjugal nickase]] | + | [[Category: Redinbo MR]] |
- | [[Category: Conjugative relaxase]]
| + | |
- | [[Category: Histidine triad]]
| + | |
- | [[Category: Huh+h motif]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Mob class relaxase]]
| + | |
- | [[Category: Trwc superfamily of relaxase enzyme]]
| + | |
| Structural highlights
Function
Q9X4G2_ECOLX
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Bacteria expand their genetic diversity, spread antibiotic resistance genes, and obtain virulence factors through the highly coordinated process of conjugative plasmid transfer (CPT). A plasmid-encoded relaxase enzyme initiates and terminates CPT by nicking and religating the transferred plasmid in a sequence-specific manner. We solved the 2.3 A crystal structure of the relaxase responsible for the spread of the resistance plasmid pCU1 and determined its DNA binding and nicking capabilities. The overall fold of the pCU1 relaxase is similar to that of the F plasmid and plasmid R388 relaxases. However, in the pCU1 structure, the conserved tyrosine residues (Y18,19,26,27) that are required for DNA nicking and religation were displaced up to 14 A out of the relaxase active site, revealing a high degree of mobility in this region of the enzyme. In spite of this flexibility, the tyrosines still cleaved the nic site of the plasmid's origin of transfer, and did so in a sequence-specific, metal-dependent manner. Unexpectedly, the pCU1 relaxase lacked the sequence-specific DNA binding previously reported for the homologous F and R388 relaxase enzymes, despite its high sequence and structural similarity with both proteins. In summary, our work outlines novel structural and functional aspects of the relaxase-mediated conjugative transfer of plasmid pCU1.
The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1.,Nash RP, Habibi S, Cheng Y, Lujan SA, Redinbo MR Nucleic Acids Res. 2010 May 6. PMID:20448025[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Nash RP, Habibi S, Cheng Y, Lujan SA, Redinbo MR. The mechanism and control of DNA transfer by the conjugative relaxase of resistance plasmid pCU1. Nucleic Acids Res. 2010 May 6. PMID:20448025 doi:10.1093/nar/gkq303
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