This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3m4a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:47, 6 September 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site==
==Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site==
-
<StructureSection load='3m4a' size='340' side='right' caption='[[3m4a]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='3m4a' size='340' side='right'caption='[[3m4a]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3m4a]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3M4A FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3m4a]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3M4A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3M4A FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DR_0690 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1299 "Micrococcus radiodurans" Raj et al. 1960])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3m4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4a OCA], [http://pdbe.org/3m4a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3m4a RCSB], [http://www.ebi.ac.uk/pdbsum/3m4a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4a ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3m4a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3m4a OCA], [https://pdbe.org/3m4a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3m4a RCSB], [https://www.ebi.ac.uk/pdbsum/3m4a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3m4a ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q9RWH8_DEIRA Q9RWH8_DEIRA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcus radiodurans raj et al. 1960]]
+
[[Category: Deinococcus radiodurans]]
-
[[Category: Mondragon, A]]
+
[[Category: Large Structures]]
-
[[Category: Patel, A]]
+
[[Category: Mondragon A]]
-
[[Category: Shuman, S]]
+
[[Category: Patel A]]
-
[[Category: Yakovleva, L]]
+
[[Category: Shuman S]]
-
[[Category: Isomerase-dna complex]]
+
[[Category: Yakovleva L]]
-
[[Category: Protein-dna complex]]
+
-
[[Category: Topib]]
+
-
[[Category: Type ib]]
+

Current revision

Crystal structure of a bacterial topoisomerase IB in complex with DNA reveals a secondary DNA binding site

PDB ID 3m4a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools