Sandbox1503

From Proteopedia

(Difference between revisions)

Revision as of 17:11, 11 January 2019

3vuf Protein(title here)

This is a default text for your page Sandbox1503. Click above on edit this page to modify. Be careful with the < and > signs.

You may include any references to papers as in: the use of JSmol in Proteopedia ^[1] or to the article describing Jmol ^[2] to the rescue.

1 Function
2 Publication Abstract from PubMed
3 Disease
4 Relevance
5 Structural highlights

Function

[SSG1_ORYSJ] Required for the synthesis of amylose in endosperm.[HAMAP-Rule:MF_00484]

Publication Abstract from PubMed

The catalytic domain of rice (Oryza sativa japonica) granule bound starch synthase I (OsGBSSI-CD) was overexpressed and the three-dimensional structures of the ligand-free and ADP-bound forms were determined. The structures were similar to those reported for bacterial and archaeal glycogen synthases, which belong to glycosyltransferase family 5. They had Rossmann fold N- and C-domains connected by canonical two-hinge peptides, and an interdomain disulfide bond that appears to be conserved in the Poaceae plant family. The presence of three covalent linkages might explain why both OsGBSSI-CD structures adopted only the closed domain arrangement.

Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis.,Momma M, Fujimoto Z Biosci Biotechnol Biochem. 2012 Aug 7. PMID:22878205^[3]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

Disease

The protein 3vuf has allergenic properties, for example in mammals it can binds to Immunoglobulin E (IgE) causing an allergic response.

Relevance

Structural highlights

3vuf is a 1 chain structure with sequence from Japanese rice. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:	,
Related:	3vue
Gene:	WAXY, WX, WX-B, Os06g0133000, LOC_Os06g04200, 134P10.7, P0679C08.19 (Japanese rice)
Activity:	NDP-glucose--starch glucosyltransferase, with EC number 2.4.1.242
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

This is a sample scene created with SAT to by Group, and another to make of the protein. You can make your own scenes on SAT starting from scratch or loading and editing one of these sample scenes.

References

↑ Hanson, R. M., Prilusky, J., Renjian, Z., Nakane, T. and Sussman, J. L. (2013), JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia. Isr. J. Chem., 53:207-216. doi:http://dx.doi.org/10.1002/ijch.201300024
↑ Herraez A. Biomolecules in the computer: Jmol to the rescue. Biochem Mol Biol Educ. 2006 Jul;34(4):255-61. doi: 10.1002/bmb.2006.494034042644. PMID:21638687 doi:10.1002/bmb.2006.494034042644
↑ Momma M, Fujimoto Z. Interdomain Disulfide Bridge in the Rice Granule Bound Starch Synthase I Catalytic Domain as Elucidated by X-Ray Structure Analysis. Biosci Biotechnol Biochem. 2012 Aug 7. PMID:22878205

1 3vuf Protein(title here)
2 References

</StructureSection>

Retrieved from "http://52.214.119.220/wiki/index.php/Sandbox1503"

@@ Line 16: / Line 16: @@
 <div class="pdbe-citations 3vuf" style="background-color:#fffaf0;"></div>
 == Disease ==
+The protein 3vuf has '''allergenic properties''', for example in mammals it can binds to Immunoglobulin E (IgE) causing an allergic response.
 == Relevance ==

Sandbox1503

From Proteopedia

Revision as of 17:11, 11 January 2019

3vuf Protein(title here)

Contents

Function

Publication Abstract from PubMed

Disease

Relevance

Structural highlights

References

Contents

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