6d6i

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'''Unreleased structure'''
 
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The entry 6d6i is ON HOLD until Paper Publication
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==Ube2V1 in complex with ubiquitin variant Ubv.V1.1 and Ube2N/Ubc13==
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<StructureSection load='6d6i' size='340' side='right'caption='[[6d6i]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
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Authors: Ceccarelli, D.F., Garg, P., Keszei, A., Sidhu, S., Sicheri, F.
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6d6i]] is a 6 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D6I OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6D6I FirstGlance]. <br>
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Description: Ube2V1 in complex with ubiquitin variant Ubv.V1.1 and Ube2N/Ubc13
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</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/E2_ubiquitin-conjugating_enzyme E2 ubiquitin-conjugating enzyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.23 2.3.2.23] </span></td></tr>
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[[Category: Unreleased Structures]]
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6d6i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d6i OCA], [http://pdbe.org/6d6i PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6d6i RCSB], [http://www.ebi.ac.uk/pdbsum/6d6i PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6d6i ProSAT]</span></td></tr>
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</table>
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== Function ==
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[[http://www.uniprot.org/uniprot/UB2V1_HUMAN UB2V1_HUMAN]] Has no ubiquitin ligase activity on its own. The UBE2V1-UBE2N heterodimer catalyzes the synthesis of non-canonical poly-ubiquitin chains that are linked through Lys-63. This type of poly-ubiquitination activates IKK and does not seem to involve protein degradation by the proteasome. Plays a role in the activation of NF-kappa-B mediated by IL1B, TNF, TRAF6 and TRAF2. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Promotes TRIM5 capsid-specific restriction activity and the UBE2V1-UBE2N heterodimer acts in concert with TRIM5 to generate 'Lys-63'-linked polyubiquitin chains which activate the MAP3K7/TAK1 complex which in turn results in the induction and expression of NF-kappa-B and MAPK-responsive inflammatory genes.<ref>PMID:9305758</ref> <ref>PMID:9418904</ref> <ref>PMID:11057907</ref> <ref>PMID:9580084</ref> <ref>PMID:9705497</ref> <ref>PMID:20061386</ref> <ref>PMID:21512573</ref> [[http://www.uniprot.org/uniprot/UBE2N_HUMAN UBE2N_HUMAN]] The UBE2V1-UBE2N and UBE2V2-UBE2N heterodimers catalyze the synthesis of non-canonical 'Lys-63'-linked polyubiquitin chains. This type of polyubiquitination does not lead to protein degradation by the proteasome. Mediates transcriptional activation of target genes. Plays a role in the control of progress through the cell cycle and differentiation. Plays a role in the error-free DNA repair pathway and contributes to the survival of cells after DNA damage. Acts together with the E3 ligases, HLTF and SHPRH, in the 'Lys-63'-linked poly-ubiquitination of PCNA upon genotoxic stress, which is required for DNA repair. Appears to act together with E3 ligase RNF5 in the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD. Promotes TRIM5 capsid-specific restriction activity and the UBE2V1-UBE2N heterodimer acts in concert with TRIM5 to generate 'Lys-63'-linked polyubiquitin chains which activate the MAP3K7/TAK1 complex which in turn results in the induction and expression of NF-kappa-B and MAPK-responsive inflammatory genes (By similarity).<ref>PMID:10089880</ref> <ref>PMID:14562038</ref> <ref>PMID:19269966</ref> <ref>PMID:20061386</ref> <ref>PMID:21512573</ref>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: E2 ubiquitin-conjugating enzyme]]
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[[Category: Large Structures]]
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[[Category: Ceccarelli, D F]]
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[[Category: Garg, P]]
[[Category: Keszei, A]]
[[Category: Keszei, A]]
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[[Category: Garg, P]]
 
[[Category: Sicheri, F]]
[[Category: Sicheri, F]]
[[Category: Sidhu, S]]
[[Category: Sidhu, S]]
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[[Category: Ceccarelli, D.F]]
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[[Category: Transferase]]
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[[Category: Ube2v1]]
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[[Category: Ubiquitin]]
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[[Category: Ubiquitin conjugating enzyme]]
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[[Category: Ubiquitin variant]]

Revision as of 10:36, 17 July 2019

Ube2V1 in complex with ubiquitin variant Ubv.V1.1 and Ube2N/Ubc13

PDB ID 6d6i

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