3mku
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Structure of a Cation-bound Multidrug and Toxin Compound Extrusion (MATE) transporter== | ==Structure of a Cation-bound Multidrug and Toxin Compound Extrusion (MATE) transporter== | ||
| - | <StructureSection load='3mku' size='340' side='right' caption='[[3mku]], [[Resolution|resolution]] 4.20Å' scene=''> | + | <StructureSection load='3mku' size='340' side='right'caption='[[3mku]], [[Resolution|resolution]] 4.20Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3mku]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3mku]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MKU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MKU FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4.2Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=RB:RUBIDIUM+ION'>RB</scene></td></tr> |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mku FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mku OCA], [https://pdbe.org/3mku PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mku RCSB], [https://www.ebi.ac.uk/pdbsum/3mku PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mku ProSAT]</span></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | |
</table> | </table> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
| Line 19: | Line 18: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mku ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3mku ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Transporter proteins from the MATE (multidrug and toxic compound extrusion) family are vital in metabolite transport in plants, directly affecting crop yields worldwide. MATE transporters also mediate multiple-drug resistance (MDR) in bacteria and mammals, modulating the efficacy of many pharmaceutical drugs used in the treatment of a variety of diseases. MATE transporters couple substrate transport to electrochemical gradients and are the only remaining class of MDR transporters whose structure has not been determined. Here we report the X-ray structure of the MATE transporter NorM from Vibrio cholerae determined to 3.65 A, revealing an outward-facing conformation with two portals open to the outer leaflet of the membrane and a unique topology of the predicted 12 transmembrane helices distinct from any other known MDR transporter. We also report a cation-binding site in close proximity to residues previously deemed critical for transport. This conformation probably represents a stage of the transport cycle with high affinity for monovalent cations and low affinity for substrates. | ||
| - | |||
| - | Structure of a cation-bound multidrug and toxic compound extrusion transporter.,He X, Szewczyk P, Karyakin A, Evin M, Hong WX, Zhang Q, Chang G Nature. 2010 Oct 21;467(7318):991-4. Epub 2010 Sep 22. PMID:20861838<ref>PMID:20861838</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 3mku" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: Chang | + | [[Category: Vibrio cholerae O1 biovar El Tor str. N16961]] |
| - | [[Category: Evin | + | [[Category: Chang G]] |
| - | [[Category: He | + | [[Category: Evin M]] |
| - | [[Category: Hong | + | [[Category: He X]] |
| - | [[Category: Karyakin | + | [[Category: Hong W-X]] |
| - | [[Category: Szewczyk | + | [[Category: Karyakin A]] |
| - | [[Category: Zhang | + | [[Category: Szewczyk P]] |
| - | + | [[Category: Zhang Q]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Structure of a Cation-bound Multidrug and Toxin Compound Extrusion (MATE) transporter
| |||||||||||

