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| | ==Structure of EUTL in the zinc-induced open form== | | ==Structure of EUTL in the zinc-induced open form== |
| - | <StructureSection load='3mpv' size='340' side='right' caption='[[3mpv]], [[Resolution|resolution]] 2.60Å' scene=''> | + | <StructureSection load='3mpv' size='340' side='right'caption='[[3mpv]], [[Resolution|resolution]] 2.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3mpv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MPV FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3mpv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MPV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MPV FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3gfh|3gfh]], [[3mpw|3mpw]], [[3mpy|3mpy]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">b2439, eutL, JW2432, yffJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mpv OCA], [https://pdbe.org/3mpv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mpv RCSB], [https://www.ebi.ac.uk/pdbsum/3mpv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mpv ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mpv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mpv OCA], [http://pdbe.org/3mpv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mpv RCSB], [http://www.ebi.ac.uk/pdbsum/3mpv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mpv ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/EUTL_ECOLI EUTL_ECOLI]] May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place. | + | [https://www.uniprot.org/uniprot/EUTL_ECOLI EUTL_ECOLI] May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ecoli]] | + | [[Category: Escherichia coli K-12]] |
| - | [[Category: Nikolakakis, K]] | + | [[Category: Large Structures]] |
| - | [[Category: Sagermann, M]] | + | [[Category: Nikolakakis K]] |
| - | [[Category: Takenoya, M]] | + | [[Category: Sagermann M]] |
| - | [[Category: Bacterial microcompartment]] | + | [[Category: Takenoya M]] |
| - | [[Category: Carboxysome]]
| + | |
| - | [[Category: Ethanolamine]]
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| - | [[Category: Membrane protein]]
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| - | [[Category: Shell protein]]
| + | |
| Structural highlights
Function
EUTL_ECOLI May be involved in the formation of a specific microcompartment in the cell in which the metabolism of potentially toxic by-products takes place.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The ethanolamine-utilizing bacterial microcompartment (Eut-BMC) of Escherichia coli is a polyhedral organelle that harbors specific enzymes for the catabolic degradation of ethanolamine. The compartment is composed of a proteinaceous shell structure that maintains a highly specialized environment for the biochemical reactions inside. Recent structural investigations have revealed hexagonal assemblies of shell proteins that form a tightly packed two-dimensional lattice that is likely to function as a selectively permeable protein membrane, wherein small channels are thought to permit controlled exchange of specific solutes. Here, we show with two nonisomorphous crystal structures that EutM also forms a two-dimensional protein membrane. As its architecture is highly similar to the membrane structure of EutL, it is likely that the structure represents a physiologically relevant form. Thus far, of all Eut proteins, only EutM and EutL have been shown to form such proteinaceous membranes. Despite their similar architectures, however, both proteins exhibit dramatically different pore structures. In contrast to EutL, the pore of EutM appears to be positively charged, indicating specificity for different solutes. Furthermore, we also show that the central pore structure of the EutL shell protein can be triggered to open specifically upon exposure to zinc ions, suggesting a specific gating mechanism.
Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli.,Takenoya M, Nikolakakis K, Sagermann M J Bacteriol. 2010 Nov;192(22):6056-63. Epub 2010 Sep 17. PMID:20851901[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Takenoya M, Nikolakakis K, Sagermann M. Crystallographic insights into the pore structures and mechanisms of the EutL and EutM shell proteins of the ethanolamine-utilizing microcompartment of Escherichia coli. J Bacteriol. 2010 Nov;192(22):6056-63. Epub 2010 Sep 17. PMID:20851901 doi:10.1128/JB.00652-10
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