6myv
From Proteopedia
(Difference between revisions)
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| - | '''Unreleased structure''' | ||
| - | + | ==Sialidase26 co-crystallized with DANA-Gc== | |
| + | <StructureSection load='6myv' size='340' side='right'caption='[[6myv]], [[Resolution|resolution]] 2.20Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6myv]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6MYV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6MYV FirstGlance]. <br> | ||
| + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GC9:2,6-anhydro-3,5-dideoxy-5-[(hydroxyacetyl)amino]-D-glycero-L-altro-non-2-enonic+acid'>GC9</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6myv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6myv OCA], [http://pdbe.org/6myv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6myv RCSB], [http://www.ebi.ac.uk/pdbsum/6myv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6myv ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | phenix.refine is a program within the PHENIX package that supports crystallographic structure refinement against experimental data with a wide range of upper resolution limits using a large repertoire of model parameterizations. It has several automation features and is also highly flexible. Several hundred parameters enable extensive customizations for complex use cases. Multiple user-defined refinement strategies can be applied to specific parts of the model in a single refinement run. An intuitive graphical user interface is available to guide novice users and to assist advanced users in managing refinement projects. X-ray or neutron diffraction data can be used separately or jointly in refinement. phenix.refine is tightly integrated into the PHENIX suite, where it serves as a critical component in automated model building, final structure refinement, structure validation and deposition to the wwPDB. This paper presents an overview of the major phenix.refine features, with extensive literature references for readers interested in more detailed discussions of the methods. | ||
| - | + | Towards automated crystallographic structure refinement with phenix.refine.,Afonine PV, Grosse-Kunstleve RW, Echols N, Headd JJ, Moriarty NW, Mustyakimov M, Terwilliger TC, Urzhumtsev A, Zwart PH, Adams PD Acta Crystallogr D Biol Crystallogr. 2012 Apr;68(Pt 4):352-67. doi:, 10.1107/S0907444912001308. Epub 2012 Mar 16. PMID:22505256<ref>PMID:22505256</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | + | </div> | |
| - | + | <div class="pdbe-citations 6myv" style="background-color:#fffaf0;"></div> | |
| - | + | == References == | |
| - | + | <references/> | |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
[[Category: Alisson-Silva, F]] | [[Category: Alisson-Silva, F]] | ||
| - | [[Category: Diaz, S.L]] | ||
| - | [[Category: Martino, C]] | ||
[[Category: Chang, G]] | [[Category: Chang, G]] | ||
| + | [[Category: Chuzel, L]] | ||
| + | [[Category: Diaz, S L]] | ||
| + | [[Category: Ganatra, M B]] | ||
[[Category: Huang, J]] | [[Category: Huang, J]] | ||
| - | [[Category: | + | [[Category: Martino, C]] |
| - | [[Category: | + | [[Category: Rees, S D]] |
[[Category: Siegel, D]] | [[Category: Siegel, D]] | ||
| - | [[Category: | + | [[Category: Taron, C H]] |
| - | [[Category: | + | [[Category: Varki, A]] |
| + | [[Category: Zaramela, L S]] | ||
| + | [[Category: Zengler, K]] | ||
| + | [[Category: Zuniga, C]] | ||
| + | [[Category: Dana]] | ||
| + | [[Category: Dana-gc]] | ||
| + | [[Category: Gc]] | ||
| + | [[Category: Hydrolase]] | ||
| + | [[Category: Inflammation]] | ||
| + | [[Category: Microbiome]] | ||
| + | [[Category: Neu5gc]] | ||
| + | [[Category: Neu5gc2en]] | ||
| + | [[Category: Sialic acid]] | ||
| + | [[Category: Sialidase]] | ||
Revision as of 10:27, 2 October 2019
Sialidase26 co-crystallized with DANA-Gc
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Categories: Large Structures | Alisson-Silva, F | Chang, G | Chuzel, L | Diaz, S L | Ganatra, M B | Huang, J | Martino, C | Rees, S D | Siegel, D | Taron, C H | Varki, A | Zaramela, L S | Zengler, K | Zuniga, C | Dana | Dana-gc | Gc | Hydrolase | Inflammation | Microbiome | Neu5gc | Neu5gc2en | Sialic acid | Sialidase
