This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ntx

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:34, 28 December 2023) (edit) (undo)
 
Line 1: Line 1:
==Crystal Structure of L-asparaginase I from Yersinia pestis==
==Crystal Structure of L-asparaginase I from Yersinia pestis==
-
<StructureSection load='3ntx' size='340' side='right' caption='[[3ntx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3ntx' size='340' side='right'caption='[[3ntx]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ntx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis_co92 Yersinia pestis co92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NTX FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ntx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis_CO92 Yersinia pestis CO92]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NTX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NTX FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ansA, y2161, YPO2161, YP_1961 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=214092 Yersinia pestis CO92])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ntx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntx OCA], [https://pdbe.org/3ntx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ntx RCSB], [https://www.ebi.ac.uk/pdbsum/3ntx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ntx ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ntx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ntx OCA], [http://pdbe.org/3ntx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ntx RCSB], [http://www.ebi.ac.uk/pdbsum/3ntx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ntx ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A3N4B0Q2_YERPE A0A3N4B0Q2_YERPE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 22: Line 22:
==See Also==
==See Also==
-
*[[Asparaginase|Asparaginase]]
+
*[[Asparaginase 3D structures|Asparaginase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Asparaginase]]
+
[[Category: Large Structures]]
-
[[Category: Yersinia pestis co92]]
+
[[Category: Yersinia pestis CO92]]
-
[[Category: Anderson, W F]]
+
[[Category: Anderson WF]]
-
[[Category: Structural genomic]]
+
[[Category: Gu M]]
-
[[Category: Gu, M]]
+
[[Category: Hasseman J]]
-
[[Category: Hasseman, J]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A]]
+
[[Category: Kim Y]]
-
[[Category: Kim, Y]]
+
-
[[Category: Alpha-beta-alpha sandwich]]
+
-
[[Category: Csgid]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal Structure of L-asparaginase I from Yersinia pestis

PDB ID 3ntx

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools