3bul

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(New page: 200px {{Structure |PDB= 3bul |SIZE=350|CAPTION= <scene name='initialview01'>3bul</scene>, resolution 2.300&Aring; |SITE= <scene name='pdbsite=AC1:B12+Binding+Site...)
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[[Image:3bul.jpg|left|200px]]
[[Image:3bul.jpg|left|200px]]
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{{Structure
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<!--
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|PDB= 3bul |SIZE=350|CAPTION= <scene name='initialview01'>3bul</scene>, resolution 2.300&Aring;
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The line below this paragraph, containing "STRUCTURE_3bul", creates the "Structure Box" on the page.
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|SITE= <scene name='pdbsite=AC1:B12+Binding+Site+For+Residue+A+1301'>AC1</scene>
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=B12:COBALAMIN'>B12</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_synthase Methionine synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.13 2.1.1.13] </span>
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or leave the SCENE parameter empty for the default display.
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|GENE= metH ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
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-->
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02965 Met_synt_B12], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd02069 methionine_synthase_B12_BD]</span>
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{{STRUCTURE_3bul| PDB=3bul | SCENE= }}
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|RELATEDENTRY=[[1k7y|1K7Y]]
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3bul FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3bul OCA], [http://www.ebi.ac.uk/pdbsum/3bul PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=3bul RCSB]</span>
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}}
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'''E. coli I690C/G743C MetH C-terminal fragment (649-1227)'''
'''E. coli I690C/G743C MetH C-terminal fragment (649-1227)'''
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[[Category: Ludwig, M L.]]
[[Category: Ludwig, M L.]]
[[Category: Pattridge, K A.]]
[[Category: Pattridge, K A.]]
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[[Category: amino-acid biosynthesis]]
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[[Category: Amino-acid biosynthesis]]
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[[Category: cobalamin]]
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[[Category: Cobalamin]]
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[[Category: cobalt]]
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[[Category: Cobalt]]
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[[Category: h759]]
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[[Category: H759]]
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[[Category: intermodular interaction]]
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[[Category: Intermodular interaction]]
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[[Category: metal-binding]]
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[[Category: Metal-binding]]
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[[Category: meth]]
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[[Category: Meth]]
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[[Category: methionine biosynthesis]]
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[[Category: Methionine biosynthesis]]
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[[Category: methyltransferase]]
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[[Category: Methyltransferase]]
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[[Category: reactivation conformation]]
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[[Category: Reactivation conformation]]
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[[Category: s-adenosyl-l-methionine]]
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[[Category: S-adenosyl-l-methionine]]
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[[Category: transferase]]
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[[Category: Transferase]]
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[[Category: zinc]]
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[[Category: Zinc]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun May 4 21:07:17 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 2 11:59:34 2008''
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Revision as of 18:07, 4 May 2008

Template:STRUCTURE 3bul

E. coli I690C/G743C MetH C-terminal fragment (649-1227)


Overview

B(12)-dependent methionine synthase (MetH) from Escherichia coli is a large modular protein that is alternately methylated by methyltetrahydrofolate to form methylcobalamin and demethylated by homocysteine to form cob(I)alamin. Major domain rearrangements are required to allow cobalamin to react with three different substrates: homocysteine, methyltetrahydrofolate, and S-adenosyl-l-methionine (AdoMet). These same rearrangements appear to preclude crystallization of the wild-type enzyme. Disulfide cross-linking was used to lock a C-terminal fragment of the enzyme into a unique conformation. Cysteine point mutations were introduced at Ile-690 and Gly-743. These cysteine residues span the cap and the cobalamin-binding module and form a cross-link that reduces the conformational space accessed by the enzyme, facilitating protein crystallization. Here, we describe an x-ray structure of the mutant fragment in the reactivation conformation; this conformation enables the transfer of a methyl group from AdoMet to the cobalamin cofactor. In the structure, the axial ligand to the cobalamin, His-759, dissociates from the cobalamin and forms intermodular contacts with residues in the AdoMet-binding module. This unanticipated intermodular interaction is expected to play a major role in controlling the distribution of conformers required for the catalytic and the reactivation cycles of the enzyme.

About this Structure

3BUL is a Single protein structure of sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

A disulfide-stabilized conformer of methionine synthase reveals an unexpected role for the histidine ligand of the cobalamin cofactor., Datta S, Koutmos M, Pattridge KA, Ludwig ML, Matthews RG, Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4115-20. Epub 2008 Mar 10. PMID:18332423 Page seeded by OCA on Sun May 4 21:07:17 2008

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