6qq6

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'''Unreleased structure'''
 
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The entry 6qq6 is ON HOLD
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==Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans==
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<StructureSection load='6qq6' size='340' side='right'caption='[[6qq6]], [[Resolution|resolution]] 3.30&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6qq6]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_xylosoxidans"_yabuuchi_and_ohyama_1971 "achromobacter xylosoxidans" yabuuchi and ohyama 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QQ6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6QQ6 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=LOP:(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL+(9Z)-OCTADEC-9-ENOATE'>LOP</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">norB_1, ERS451415_02175 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=85698 "Achromobacter xylosoxidans" Yabuuchi and Ohyama 1971])</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Nitric-oxide_reductase_(cytochrome_c) Nitric-oxide reductase (cytochrome c)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.7.2.5 1.7.2.5] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6qq6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qq6 OCA], [http://pdbe.org/6qq6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qq6 RCSB], [http://www.ebi.ac.uk/pdbsum/6qq6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qq6 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Quinol-dependent nitric oxide reductases (qNORs) are membrane-integrated, iron-containing enzymes of the denitrification pathway, which catalyze the reduction of nitric oxide (NO) to the major ozone destroying gas nitrous oxide (N2O). Cryo-electron microscopy structures of active qNOR from Alcaligenes xylosoxidans and an activity-enhancing mutant have been determined to be at local resolutions of 3.7 and 3.2 A, respectively. They unexpectedly reveal a dimeric conformation (also confirmed for qNOR from Neisseria meningitidis) and define the active-site configuration, with a clear water channel from the cytoplasm. Structure-based mutagenesis has identified key residues involved in proton transport and substrate delivery to the active site of qNORs. The proton supply direction differs from cytochrome c-dependent NOR (cNOR), where water molecules from the cytoplasm serve as a proton source similar to those from cytochrome c oxidase.
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Authors: Gopalasingam, C.C., Johnson, R.M., Chiduza, G.N., Tosha, T., Yamamoto, M., Shiro, Y., Antonyuk, S.V., Muench, S.P., Hasnain, S.S.
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Dimeric structures of quinol-dependent nitric oxide reductases (qNORs) revealed by cryo-electron microscopy.,Gopalasingam CC, Johnson RM, Chiduza GN, Tosha T, Yamamoto M, Shiro Y, Antonyuk SV, Muench SP, Hasnain SS Sci Adv. 2019 Aug 28;5(8):eaax1803. doi: 10.1126/sciadv.aax1803. eCollection 2019, Aug. PMID:31489376<ref>PMID:31489376</ref>
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Description: Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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<div class="pdbe-citations 6qq6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Achromobacter xylosoxidans yabuuchi and ohyama 1971]]
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[[Category: Large Structures]]
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[[Category: Antonyuk, S V]]
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[[Category: Chiduza, G N]]
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[[Category: Gopalasingam, C C]]
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[[Category: Hasnain, S S]]
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[[Category: Johnson, R M]]
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[[Category: Muench, S P]]
[[Category: Shiro, Y]]
[[Category: Shiro, Y]]
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[[Category: Gopalasingam, C.C]]
 
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[[Category: Yamamoto, M]]
 
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[[Category: Hasnain, S.S]]
 
[[Category: Tosha, T]]
[[Category: Tosha, T]]
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[[Category: Muench, S.P]]
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[[Category: Yamamoto, M]]
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[[Category: Antonyuk, S.V]]
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[[Category: Homodimer]]
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[[Category: Johnson, R.M]]
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[[Category: Membrane protein]]
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[[Category: Chiduza, G.N]]
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[[Category: Oxidoreductase]]
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[[Category: Proton transfer]]

Revision as of 12:44, 18 December 2019

Cryo-EM structure of dimeric quinol dependent nitric oxide reductase (qNOR) Val495Ala mutant from Alcaligenes xylosoxidans

PDB ID 6qq6

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