This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


Arabinanase

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 15: Line 15:
</StructureSection>
</StructureSection>
- 
-
== 3D Structures of Arabinanase ==
 
- 
-
Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
 
-
{{#tree:id=OrganizedByTopic|openlevels=0|
 
- 
-
*Endo-arabinanase
 
- 
-
**[[2x8f]], [[1uv4]] – BsEndo-Ara – ''Bacillus subtilis''<br />
 
-
**[[2x8t]], [[4cot]] - BsEndo-Ara (mutant) <br />
 
-
**[[3cu9]], [[1wl7]], [[5ho0]], [[5ho2]], [[5hp6]] – GsEndo-Ara – ''Geobacillus stearothermophilus''<br />
 
-
**[[3d5y]], [[3d60]] - GsEndo-Ara (mutant) <br />
 
-
**[[1gyd]] – CcEndo-Ara – ''Cellvibrio cellulose''<br />
 
-
**[[1gyh]] - CcEndo-Ara (mutant)<br />
 
-
**[[4kc7]], [[4kc8]] - TpEndo-Ara – ''Thermotoga petrophila''<br />
 
-
**[[4kca]], [[4kcb]] - Endo-Ara – bovine<br />
 
-
**[[6b7k]] - Endo-Ara – ''Bacillus licheniformis''<br />
 
- 
-
*Endo-arabinanase complex with substrate
 
- 
-
**[[1gye]] - CcEndo-Ara (mutant) + arabinohexaose<br />
 
-
**[[3d5z]], [[3d61]] - GsEndo-Ara (mutant) + arabinotriose<br />
 
-
**[[5ho9]] - GsEndo-Ara + arabinooctaose<br />
 
-
**[[5hof]], [[6f1g]] - GsEndo-Ara + arabinopentaose<br />
 
-
**[[5hon]] - GsEndo-Ara + arabinotriose<br />
 
-
**[[2x8s]] - BsEndo-Ara (mutant) + arabinotriose<br />
 
-
**[[6a8h]] - GtEndo-Ara (mutant) + arabinotriose – ''Geobacillus thermodenitrificans''<br />
 
-
**[[6a8i]] - GtEndo-Ara (mutant) + arabinohexaose <br />
 
- 
-
*Exo-arabinanase
 
- 
-
**[[3a71]] – PcExo-Ara residues 24-378 – ''Penicillium chrysogenum''<br />
 
-
**[[2w5n]] – GzExo-Ara – ''Gibberella zeae''
 
- 
-
*Exo-arabinanase complex with substrate
 
- 
-
**[[3a72]] - PcExo-Ara residues 24-378 + arabinobiose<br />
 
-
**[[2w5o]] - GzExo-Ara + arabinobiose<br />
 
- 
-
}}
 
== References ==
== References ==

Revision as of 11:12, 19 March 2019

Endo-arabinanase complex with arabinohexose (yellow) and Cl- ion (green) (PDB code 1gye)

Drag the structure with the mouse to rotate

References

  1. ↑ Alhassid A, Ben-David A, Tabachnikov O, Libster D, Naveh E, Zolotnitsky G, Shoham Y, Shoham G. Crystal structure of an inverting GH 43 1,5-alpha-L-arabinanase from Geobacillus stearothermophilus complexed with its substrate. Biochem J. 2009 Jul 29;422(1):73-82. PMID:19505290 doi:10.1042/BJ20090180
  2. ↑ Nurizzo D, Turkenburg JP, Charnock SJ, Roberts SM, Dodson EJ, McKie VA, Taylor EJ, Gilbert HJ, Davies GJ. Cellvibrio japonicus alpha-L-arabinanase 43A has a novel five-blade beta-propeller fold. Nat Struct Biol. 2002 Sep;9(9):665-8. PMID:12198486 doi:10.1038/nsb835

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky

Retrieved from "http://52.214.119.220/wiki/index.php/Arabinanase"
Personal tools