This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4c9l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4c9l' size='340' side='right'caption='[[4c9l]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='4c9l' size='340' side='right'caption='[[4c9l]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4c9l]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700278 Atcc 700278]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4C9L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4C9L FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4c9l]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Novosphingobium_aromaticivorans Novosphingobium aromaticivorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4C9L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4C9L FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CAM:CAMPHOR'>CAM</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAM:CAMPHOR'>CAM</scene>, <scene name='pdbligand=CYN:CYANIDE+ION'>CYN</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4c9k|4c9k]], [[4c9m|4c9m]], [[4c9n|4c9n]], [[4c9o|4c9o]], [[4c9p|4c9p]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4c9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4c9l OCA], [https://pdbe.org/4c9l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4c9l RCSB], [https://www.ebi.ac.uk/pdbsum/4c9l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4c9l ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4c9l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4c9l OCA], [http://pdbe.org/4c9l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4c9l RCSB], [http://www.ebi.ac.uk/pdbsum/4c9l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4c9l ProSAT]</span></td></tr>
+
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[[https://www.uniprot.org/uniprot/Q2GB12_NOVAD Q2GB12_NOVAD]]
-
Although CYP101D1 and P450cam catalyze the same reaction at similar rates and share strikingly similar active site architectures, there are significant functional differences. CYP101D1 thus provides an opportunity to probe what structural and functional features must be shared and what features can differ but maintain the high catalytic efficiency. Crystal structures of the cyanide complex of wild-type CYP101D1 and it active site mutants, D259N and T260A, have been determined. The conformational changes in CYP101D1 upon cyanide binding are very similar to those of P450cam, indicating a similar mechanism for proton delivery during oxygen activation using solvent-assisted proton transfer. The D259N-CN- complex shows a perturbed solvent structure compared to that of the wild type, which is similar to what was observed in the oxy complex of the corresonding D251N mutant in P450cam. As in P450cam, the T260A mutant is highly uncoupled while the D259N mutant gives barely detectable activity. Despite these similarities, CYP101D1 is able to use the P450cam redox partners while P450cam cannot use the CYP101D1 redox partners. Thus, the strict requirement of P450cam for its own redox partner is relaxed in CYP101D1. Differences in the local environment of the essential Asp (Asp259 in CYP101D1) provide a strucutral basis for understanding these functional differences.
+
-
 
+
-
Crystal Structures and Functional Characterization of Wild-Type CYP101D1 and Its Active Site Mutants.,Batabyal D, Poulos TL Biochemistry. 2013 Nov 27. PMID:24261604<ref>PMID:24261604</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 4c9l" style="background-color:#fffaf0;"></div>
+
==See Also==
==See Also==
-
*[[Cytochrome P450|Cytochrome P450]]
+
*[[Cytochrome P450 3D structures|Cytochrome P450 3D structures]]
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 700278]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Batabyal, D]]
+
[[Category: Novosphingobium aromaticivorans]]
-
[[Category: Poulos, T L]]
+
[[Category: Batabyal D]]
-
[[Category: Mono-oxygenase]]
+
[[Category: L Poulos T]]
-
[[Category: Oxidoreductase]]
+

Revision as of 17:33, 7 September 2022

Structure of Cyanide and Camphor bound wild type CYP101D1

PDB ID 4c9l

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4c9l"
Personal tools