This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4d1j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4d1j' size='340' side='right'caption='[[4d1j]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='4d1j' size='340' side='right'caption='[[4d1j]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4d1j]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Celju Celju]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D1J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4D1J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4d1j]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cellvibrio_japonicus_Ueda107 Cellvibrio japonicus Ueda107]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4D1J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4D1J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DGJ:(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-3,4,5-TRIOL'>DGJ</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=DGJ:(2R,3S,4R,5S)-2-(HYDROXYMETHYL)PIPERIDINE-3,4,5-TRIOL'>DGJ</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4d1i|4d1i]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4d1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d1j OCA], [https://pdbe.org/4d1j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4d1j RCSB], [https://www.ebi.ac.uk/pdbsum/4d1j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4d1j ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-galactosidase Beta-galactosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.23 3.2.1.23] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4d1j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4d1j OCA], [http://pdbe.org/4d1j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4d1j RCSB], [http://www.ebi.ac.uk/pdbsum/4d1j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4d1j ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[[https://www.uniprot.org/uniprot/B3PBE0_CELJU B3PBE0_CELJU]]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-galactosidase]]
+
[[Category: Cellvibrio japonicus Ueda107]]
-
[[Category: Celju]]
+
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Brumer, H]]
+
[[Category: Brumer H]]
-
[[Category: Davies, G J]]
+
[[Category: Davies GJ]]
-
[[Category: Gardner, J G]]
+
[[Category: Gardner JG]]
-
[[Category: Larsbrink, J]]
+
[[Category: Larsbrink J]]
-
[[Category: Lundqvist, M]]
+
[[Category: Lundqvist M]]
-
[[Category: Thompson, A J]]
+
[[Category: Thompson AJ]]
-
[[Category: Enzyme-carbohydrate interaction]]
+
-
[[Category: Glycosidase inhibition]]
+
-
[[Category: Hydrolase]]
+

Revision as of 07:42, 14 September 2022

The structure of the GH35 beta-galactosidase Bgl35A from Cellvibrio japonicas in complex with 1-Deoxygalactonojirimycin

PDB ID 4d1j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4d1j"
Personal tools