6oa7

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'''Unreleased structure'''
 
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The entry 6oa7 is ON HOLD
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==Horse liver L57F alcohol dehydrogenase E complexed with NAD and trifluoroethanol==
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<StructureSection load='6oa7' size='340' side='right'caption='[[6oa7]], [[Resolution|resolution]] 1.10&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6oa7]] is a 2 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6OA7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6OA7 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ETF:TRIFLUOROETHANOL'>ETF</scene>, <scene name='pdbligand=MRD:(4R)-2-METHYLPENTANE-2,4-DIOL'>MRD</scene>, <scene name='pdbligand=NAJ:NICOTINAMIDE-ADENINE-DINUCLEOTIDE+(ACIDIC+FORM)'>NAJ</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dxh|4dxh]], [[6o91|6o91]], [[5kcz|5kcz]]</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Alcohol_dehydrogenase Alcohol dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.1 1.1.1.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6oa7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6oa7 OCA], [http://pdbe.org/6oa7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6oa7 RCSB], [http://www.ebi.ac.uk/pdbsum/6oa7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6oa7 ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Primary and secondary kD/kT and kH/kT kinetic isotope effects have been studied as a probe of hydrogen tunneling in the oxidation of benzyl alcohol catalyzed by horse liver alcohol dehydrogenase (LADH). In the case of the wild-type enzyme, isotope effects at 25 degrees C do not clearly support hydrogen tunneling; this result is consistent with a reaction rate that is partially limited by the release of product benzaldehyde. The three-dimensional structure for LADH was used to design site-directed mutations in an effort to enhance the rate of the product release step and to "unmask" tunneling. Substitutions that increased the size of the alcohol binding pocket resulted in minor changes in isotope effects. By contrast, reduction in the size of the alcohol binding pocket through substitution at residues 57 and 93, which are in van der Waals contact with bound alcohol substrate, produced a clear demonstration of protium tunneling from the breakdown of the semiclassical relationship between kD/kT and kH/kT isotope effects. The temperature dependence of kD/kT isotope effects has also been pursued, leading to the conclusion that tunneling does, in fact, occur in the reaction catalyzed by wild-type LADH. Despite the unmasking of protium tunneling in site-directed mutants, substitutions that decrease the size of the alcohol pocket appear to result in less extensive tunneling in the hydride transfer. It is noteworthy that the mutant enzyme (Leu57--&gt;Phe), which shows the greatest evidence of tunneling, has the same catalytic efficiency (Vmax/Km) as the wild-type enzyme.(ABSTRACT TRUNCATED AT 250 WORDS)
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Authors: Plapp, B.V.
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Unmasking of hydrogen tunneling in the horse liver alcohol dehydrogenase reaction by site-directed mutagenesis.,Bahnson BJ, Park DH, Kim K, Plapp BV, Klinman JP Biochemistry. 1993 Jun 1;32(21):5503-7. PMID:8504071<ref>PMID:8504071</ref>
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Description: Horse liver L57F alcohol dehydrogenase E complexed with NAD and trifluoroethanol
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Plapp, B.V]]
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<div class="pdbe-citations 6oa7" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Alcohol dehydrogenase]]
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[[Category: Large Structures]]
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[[Category: Plapp, B V]]
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[[Category: 2-trifluoroethanol]]
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[[Category: Horse liver e enzyme]]
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[[Category: Leu57 to phe57 substitution]]
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[[Category: Nad]]
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[[Category: Oxidoreductase]]

Revision as of 07:13, 3 April 2019

Horse liver L57F alcohol dehydrogenase E complexed with NAD and trifluoroethanol

PDB ID 6oa7

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