6r95
From Proteopedia
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- | '''Unreleased structure''' | ||
- | The | + | ==The solution NMR structure of cis-dicarba-brevinin-1BYa in 33% trifluoroethanol== |
+ | <StructureSection load='6r95' size='340' side='right'caption='[[6r95]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6r95]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R95 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6R95 FirstGlance]. <br> | ||
+ | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=ABA:ALPHA-AMINOBUTYRIC+ACID'>ABA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6r95 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r95 OCA], [http://pdbe.org/6r95 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r95 RCSB], [http://www.ebi.ac.uk/pdbsum/6r95 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r95 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Brevinin-1BYa is a 24-amino acid residue host-defense peptide, first isolated from skin secretions of the foothill yellow-legged frog Rana boylii. The peptide is of interest, as it shows broad-spectrum antimicrobial activity, and is particularly effective against opportunistic yeast pathogens. Its potential for clinical use, however, is hindered by its latent haemolytic activity. The structures of two analogues, the less haemolytic [C18S,C24S]brevinin-1BYa and the more potent cis-dicarba-brevinin-1BYa, were investigated in various solution and membrane-mimicking environments by [Formula: see text] spectroscopy and molecular modelling techniques. Neither peptide possesses a secondary structure in aqueous solution. In both the membrane-mimicking sodium dodecyl sulphate micelles and 33% 2,2,2-trifluoroethanol ([Formula: see text] solvent mixture, the peptides' structures are characterised by two [Formula: see text]-helices connected by a flexible hinge located at the [Formula: see text] residues. With the aid of molecular dynamics simulations and paramagnetic probes, it was determined that the peptides' helical segments lie parallel to the micellar surface, with their hydrophobic residues facing towards the micelle core and the hydrophilic residues pointing outwards, suggesting that both peptides exert their biological activity by a non-pore-forming mechanism. Unlike that of the dicarba analogue, the C-terminus of the acyclic peptide is only weakly associated with the micellar surface and is in direct contact with the surrounding aqueous solvent. | ||
- | + | Insights into conformation and membrane interactions of the acyclic and dicarba-bridged brevinin-1BYa antimicrobial peptides.,Timmons PB, O'Flynn D, Conlon JM, Hewage CM Eur Biophys J. 2019 Dec;48(8):701-710. doi: 10.1007/s00249-019-01395-y. Epub 2019, Sep 12. PMID:31515575<ref>PMID:31515575</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
+ | <div class="pdbe-citations 6r95" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Conlon, J M]] | ||
+ | [[Category: Flynn, D P.O]] | ||
+ | [[Category: Hewage, C M]] | ||
+ | [[Category: Timmons, P B]] | ||
+ | [[Category: Antimicrobial peptide]] | ||
+ | [[Category: Antimicrobial protein]] | ||
+ | [[Category: Cationic]] | ||
+ | [[Category: Rana-box]] |
Revision as of 17:56, 20 November 2019
The solution NMR structure of cis-dicarba-brevinin-1BYa in 33% trifluoroethanol
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