4njl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='4njl' size='340' side='right'caption='[[4njl]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='4njl' size='340' side='right'caption='[[4njl]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4njl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Mers Mers]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NJL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4NJL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4njl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Middle_East_respiratory_syndrome-related_coronavirus Middle East respiratory syndrome-related coronavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4NJL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4NJL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
+
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4njl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4njl OCA], [http://pdbe.org/4njl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4njl RCSB], [http://www.ebi.ac.uk/pdbsum/4njl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4njl ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4njl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4njl OCA], [https://pdbe.org/4njl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4njl RCSB], [https://www.ebi.ac.uk/pdbsum/4njl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4njl ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/R9UQ53_MERS R9UQ53_MERS] Spike protein S1: attaches the virion to the cell membrane by interacting with host receptor, initiating the infection.[HAMAP-Rule:MF_04099] Spike protein S2': Acts as a viral fusion peptide which is unmasked following S2 cleavage occurring upon virus endocytosis.[HAMAP-Rule:MF_04099] Spike protein S2: mediates fusion of the virion and cellular membranes by acting as a class I viral fusion protein. Under the current model, the protein has at least three conformational states: pre-fusion native state, pre-hairpin intermediate state, and post-fusion hairpin state. During viral and target cell membrane fusion, the coiled coil regions (heptad repeats) assume a trimer-of-hairpins structure, positioning the fusion peptide in close proximity to the C-terminal region of the ectodomain. The formation of this structure appears to drive apposition and subsequent fusion of viral and target cell membranes.[HAMAP-Rule:MF_04099]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 21: Line 23:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Mers]]
+
[[Category: Middle East respiratory syndrome-related coronavirus]]
-
[[Category: Jiang, S]]
+
[[Category: Jiang S]]
-
[[Category: Lu, L]]
+
[[Category: Lu L]]
-
[[Category: Qin, L]]
+
[[Category: Qin L]]
-
[[Category: Ye, S]]
+
[[Category: Ye S]]
-
[[Category: Zhang, R]]
+
[[Category: Zhang R]]
-
[[Category: Zhu, Y]]
+
[[Category: Zhu Y]]
-
[[Category: Coronavirus]]
+
-
[[Category: Fusion core]]
+
-
[[Category: Fusion inhibitor]]
+
-
[[Category: Mers-cov]]
+
-
[[Category: Six-helix-bundle]]
+
-
[[Category: Viral protein]]
+

Revision as of 08:31, 11 January 2023

Crystal structure of middle east respiratory syndrome coronavirus S2 protein fusion core

PDB ID 4njl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools