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5vqj

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Discovery of a first GH11 exo-1,4-beta-xylanase from a diverse microbial sugar cane bagasse composting community

Structural highlights

5vqj is a 1 chain structure with sequence from Unidentified. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.761Å
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Publication Abstract from PubMed

Background: Using globally abundant crop residues as a carbon source for energy generation and renewable chemicals production stand out as a promising solution to reduce current dependency on fossil fuels. In nature, such as in compost habitats, microbial communities efficiently degrade the available plant biomass using a diverse set of synergistic enzymes. However, deconstruction of lignocellulose remains a challenge for industry due to recalcitrant nature of the substrate and the inefficiency of the enzyme systems available, making the economic production of lignocellulosic biofuels difficult. Metatranscriptomic studies of microbial communities can unveil the metabolic functions employed by lignocellulolytic consortia and identify novel biocatalysts that could improve industrial lignocellulose conversion. Results: In this study, a microbial community from compost was grown in minimal medium with sugarcane bagasse sugarcane bagasse as the sole carbon source. Solid-state nuclear magnetic resonance was used to monitor lignocellulose degradation; analysis of metatranscriptomic data led to the selection and functional characterization of several target genes, revealing the first glycoside hydrolase from Carbohydrate Active Enzyme family 11 with exo-1,4-beta-xylanase activity. The xylanase crystal structure was resolved at 1.76 A revealing the structural basis of exo-xylanase activity. Supplementation of a commercial cellulolytic enzyme cocktail with the xylanase showed improvement in Avicel hydrolysis in the presence of inhibitory xylooligomers. Conclusions: This study demonstrated that composting microbiomes continue to be an excellent source of biotechnologically important enzymes by unveiling the diversity of enzymes involved in in situ lignocellulose degradation.

Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-beta-xylanase activity.,Mello BL, Alessi AM, Riano-Pachon DM, deAzevedo ER, Guimaraes FEG, Espirito Santo MC, McQueen-Mason S, Bruce NC, Polikarpov I Biotechnol Biofuels. 2017 Nov 2;10:254. doi: 10.1186/s13068-017-0944-4., eCollection 2017. PMID:29118851^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Mello BL, Alessi AM, Riano-Pachon DM, deAzevedo ER, Guimaraes FEG, Espirito Santo MC, McQueen-Mason S, Bruce NC, Polikarpov I. Targeted metatranscriptomics of compost-derived consortia reveals a GH11 exerting an unusual exo-1,4-beta-xylanase activity. Biotechnol Biofuels. 2017 Nov 2;10:254. doi: 10.1186/s13068-017-0944-4., eCollection 2017. PMID:29118851 doi:http://dx.doi.org/10.1186/s13068-017-0944-4

1 Structural highlights
2 Publication Abstract from PubMed
3 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/5vqj"

Categories: Large Structures | Unidentified | Mello BL | Polikarpov I

@@ Line 3: / Line 3: @@
 <StructureSection load='5vqj' size='340' side='right'caption='[[5vqj]], [[Resolution|resolution]] 1.76&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[5vqj]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Miscellaneous_nucleic_acid Miscellaneous nucleic acid]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5VQJ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[5vqj]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Unidentified Unidentified]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5VQJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5VQJ FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5vqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqj OCA], [http://pdbe.org/5vqj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5vqj RCSB], [http://www.ebi.ac.uk/pdbsum/5vqj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqj ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.761&#8491;</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5vqj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5vqj OCA], [https://pdbe.org/5vqj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5vqj RCSB], [https://www.ebi.ac.uk/pdbsum/5vqj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5vqj ProSAT]</span></td></tr>
 </table>
 <div style="background-color:#fffaf0;">
@@ Line 20: / Line 21: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Miscellaneous nucleic acid]]
+[[Category: Unidentified]]
-[[Category: Mello, B L]]
+[[Category: Mello BL]]
-[[Category: Polikarpov, I]]
+[[Category: Polikarpov I]]
-[[Category: Beta-jelly roll]]
-[[Category: Hydrolase]]

5vqj

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Current revision

Discovery of a first GH11 exo-1,4-beta-xylanase from a diverse microbial sugar cane bagasse composting community

Structural highlights

Publication Abstract from PubMed

References

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Proteopedia Page Contributors and Editors (what is this?)

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