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| | <StructureSection load='5zcu' size='340' side='right'caption='[[5zcu]], [[Resolution|resolution]] 2.41Å' scene=''> | | <StructureSection load='5zcu' size='340' side='right'caption='[[5zcu]], [[Resolution|resolution]] 2.41Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5zcu]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Japanese_rice Japanese rice] and [http://en.wikipedia.org/wiki/Orysa Orysa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ZCU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5zcu]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa Oryza sativa] and [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZCU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZCU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PYV:4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE'>PYV</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.413Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Os05g0537400, LOC_Os05g46040, OJ1741_B01.18, OSJNBa0052K01.2 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39947 Japanese rice])</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PYV:4-BROMO-N-(PYRIDIN-2-YLMETHYL)NAPHTHALENE-1-SULFONAMIDE'>PYV</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Phosphoprotein_phosphatase Phosphoprotein phosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.16 3.1.3.16] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zcu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcu OCA], [https://pdbe.org/5zcu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zcu RCSB], [https://www.ebi.ac.uk/pdbsum/5zcu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcu ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5zcu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zcu OCA], [http://pdbe.org/5zcu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5zcu RCSB], [http://www.ebi.ac.uk/pdbsum/5zcu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5zcu ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/P2C50_ORYSJ P2C50_ORYSJ] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Japanese rice]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Orysa]] | + | [[Category: Oryza sativa]] |
| - | [[Category: Phosphoprotein phosphatase]] | + | [[Category: Oryza sativa Japonica Group]] |
| - | [[Category: Han, S]] | + | [[Category: Han S]] |
| - | [[Category: Lee, S]] | + | [[Category: Lee S]] |
| - | [[Category: Lee, Y]] | + | [[Category: Lee Y]] |
| - | [[Category: Aba receptor]]
| + | |
| - | [[Category: Complex]]
| + | |
| - | [[Category: Plant protein]]
| + | |
| - | [[Category: Pp2c]]
| + | |
| - | [[Category: Pyrabactin]]
| + | |
| - | [[Category: Signaling protein]]
| + | |
| Structural highlights
Function
P2C50_ORYSJ
Publication Abstract from PubMed
KEY MESSAGE: We determined the structure of OsPYL/RCAR3:OsPP2C50 complex with pyrabactin. Our results suggest that a less-conserved phenylalanine of OsPYL/RCAR subfamily I is one of considerations of ABA agonist development for Oryza sativa. Pyrabactin is a synthetic chemical mimicking abscisic acid (ABA), a naturally occurring phytohormone orchestrating abiotic stress responses. ABA and pyrabactin share the same pocket in the ABA receptors but pyrabactin modulates ABA signaling differently, exhibiting both agonistic and antagonistic effects. To explore structural determinants of differential functionality of pyrabactin, we determined the crystal structure of OsPYL/RCAR3:pyrabactin:OsPP2C50, the first rice ABA receptor:co-receptor complex structure with a synthetic ABA mimicry. The water-mediated interaction between the wedging Trp-259 of OsPP2C50 and pyrabactin is lost, undermining the structural integrity of the ABA receptor:co-receptor. The loss of the interaction of the wedging tryptophan of OsPP2C with pyrabactin appears to contribute to the weaker functionality of pyrabactin. Pyrabactin in the OsPYL/RCAR3:OsPP2C50 complex adopts a conformation different from that in ABA receptors from Arabidopsis. Phe125, specific to the subfamily I of OsPYL/RCARs in the ABA binding pocket, appears to be the culprit for the differential conformation of pyrabactin. Although the gate closure essential for the integrity of ABA receptor:co-receptor is preserved in the presence of pyrabactin, Phe125 apparently restricts accessibility of pyrabactin, leading to decreased affinity for OsPYL/RCAR3 evidenced by phosphatase assay. However, Phe125 does not affect conformation and accessibility of ABA. Yeast two-hybrid, germination and gene transcription analyses in rice also support that pyrabactin imposes a weak effect on the control of ABA signaling. Taken together, our results suggest that phenylalanine substitution of OsPYL/RCARs subfamily I may be one of considerations for ABA synthetic agonist development.
Structural determinants for pyrabactin recognition in ABA receptors in Oryza sativa.,Han S, Lee Y, Park EJ, Min MK, Lee Y, Kim TH, Kim BG, Lee S Plant Mol Biol. 2019 Apr 2. pii: 10.1007/s11103-019-00862-6. doi:, 10.1007/s11103-019-00862-6. PMID:30941543[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Han S, Lee Y, Park EJ, Min MK, Lee Y, Kim TH, Kim BG, Lee S. Structural determinants for pyrabactin recognition in ABA receptors in Oryza sativa. Plant Mol Biol. 2019 Apr 2. pii: 10.1007/s11103-019-00862-6. doi:, 10.1007/s11103-019-00862-6. PMID:30941543 doi:http://dx.doi.org/10.1007/s11103-019-00862-6
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