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4pws

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Revision as of 07:35, 8 February 2023

Crystal structure of secreted proline rich antigen MTC28 (Rv0040c) at 2.15 A with bound chloride from Mycobacterium tuberculosis

Structural highlights

4pws is a 1 chain structure with sequence from Mycobacterium tuberculosis. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

PR28_MYCTU

Publication Abstract from PubMed

Secretary proteins of Mycobacterium tuberculosis are key players of the mycobacterial infection pathway. MTC28 is a 28-kDa proline-rich secretary antigen of Mycobacterium tuberculosis and is only conserved in pathogenic strains of mycobacteria. Here we report the crystal structure of MTC28 at 2.8- and 2.15-A resolutions for the structure-based epitope design. MTC28 shares a "mog1p"-fold consisting of seven antiparallel beta strands stacked between alpha helices. Five probable epitopes have been located on a solvent-accessible flexible region by computational analysis of the structure of MTC28. Simultaneously, the protein is digested with trypsin and the resulting fragments are purified by HPLC. Such 10 purified peptide fragments are screened against sera from patients infected with pulmonary tuberculosis (PTB). Two of these 10 fragments, namely (127)ALDITLPMPPR(137) and (138)WTQVPDPNVPDAFVVIADR(156),are found to be major immunogenic epitopes that are localized on the outer surface of the protein molecule and are part of a single continuous epitope that have been predicted in silico Mutagenesis and antibody inhibition studies are in accordance with the results obtained from epitope mapping.

Structure-based Epitope Mapping of Mycobacterium tuberculosis Secretary Antigen MTC28.,Kundu P, Biswas R, Mukherjee S, Reinhard L, Dutta A, Mueller-Dieckmann J, Weiss MS, Pal NK, Das AK J Biol Chem. 2016 Jul 1;291(27):13943-54. doi: 10.1074/jbc.M116.726422. Epub 2016, May 4. PMID:27189947^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kundu P, Biswas R, Mukherjee S, Reinhard L, Dutta A, Mueller-Dieckmann J, Weiss MS, Pal NK, Das AK. Structure-based Epitope Mapping of Mycobacterium tuberculosis Secretary Antigen MTC28. J Biol Chem. 2016 Jul 1;291(27):13943-54. doi: 10.1074/jbc.M116.726422. Epub 2016, May 4. PMID:27189947 doi:http://dx.doi.org/10.1074/jbc.M116.726422

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4pws"

@@ Line 3: / Line 3: @@
 <StructureSection load='4pws' size='340' side='right'caption='[[4pws]], [[Resolution|resolution]] 2.15&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4pws]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_tuberculosis"_(zopf_1883)_klein_1884 "bacillus tuberculosis" (zopf 1883) klein 1884]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PWS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4PWS FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4pws]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis Mycobacterium tuberculosis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4PWS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4PWS FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
+</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MT0046, mtc28, MTCY21D4.03c, Rv0040c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1773 "Bacillus tuberculosis" (Zopf 1883) Klein 1884])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4pws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pws OCA], [https://pdbe.org/4pws PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4pws RCSB], [https://www.ebi.ac.uk/pdbsum/4pws PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4pws ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4pws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4pws OCA], [http://pdbe.org/4pws PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4pws RCSB], [http://www.ebi.ac.uk/pdbsum/4pws PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4pws ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/PR28_MYCTU PR28_MYCTU]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 23: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Biswas, R]]
+[[Category: Mycobacterium tuberculosis]]
-[[Category: Das, A K]]
+[[Category: Biswas R]]
-[[Category: Kundu, P]]
+[[Category: Das AK]]
-[[Category: Mueller-dieckmann, J]]
+[[Category: Kundu P]]
-[[Category: Mukherjee, S]]
+[[Category: Mueller-dieckmann J]]
-[[Category: Reinhard, L]]
+[[Category: Mukherjee S]]
-[[Category: Weiss, M S]]
+[[Category: Reinhard L]]
-[[Category: Immune system]]
+[[Category: Weiss MS]]
-[[Category: Probable lipoprotein lpqn]]

4pws

From Proteopedia

Revision as of 07:35, 8 February 2023

Crystal structure of secreted proline rich antigen MTC28 (Rv0040c) at 2.15 A with bound chloride from Mycobacterium tuberculosis

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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