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Cadherin 3D structures
From Proteopedia
(Difference between revisions)
(New page: == 3D Structures of Cadherin == Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} {{#tree:id=OrganizedByTopic|openlevels=0| * CDH5 **2koh – mCDH5+PAR3-...) |
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Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}} | ||
{{#tree:id=OrganizedByTopic|openlevels=0| | {{#tree:id=OrganizedByTopic|openlevels=0| | ||
| + | |||
| + | *CDH1 encoded by CDH1 | ||
| + | |||
| + | **[[6cxy]] – hCDH1 + antibody - human<br /> | ||
* CDH5 | * CDH5 | ||
| Line 35: | Line 39: | ||
* CDH23 | * CDH23 | ||
| - | + | ||
| - | + | **[[2kbr]] – hCDH23 peptide+harmonin – NMR <br /> | |
| - | **[[2kbr]] – hCDH23 peptide+harmonin – NMR | + | |
**[[2kbs]] - hCDH23 C-terminal peptide+harmonin PDZ2 – NMR<br /> | **[[2kbs]] - hCDH23 C-terminal peptide+harmonin PDZ2 – NMR<br /> | ||
| + | **[[5wj8]] - hCDH23 EC13-EC14<br /> | ||
| + | **[[5vvm]] - hCDH23 EC21-EC23<br /> | ||
| + | **[[3mvs]], [[2whv]] – mCDH23 N-terminal<br /> | ||
**[[2wbx]] – mCDH23 EC1<br /> | **[[2wbx]] – mCDH23 EC1<br /> | ||
**[[2wcp]] - mCDH23 EC2<br /> | **[[2wcp]] - mCDH23 EC2<br /> | ||
**[[2wd0]] - mCDH23 EC1-EC2 (mutant)<br /> | **[[2wd0]] - mCDH23 EC1-EC2 (mutant)<br /> | ||
| - | **[[5w4t]] - CDH23 EC1-EC3 - zebrafish<br /> | ||
**[[5tfm]] - mCDH23 EC6-EC8<br /> | **[[5tfm]] - mCDH23 EC6-EC8<br /> | ||
**[[5tfl]] - mCDH23 EC7-EC8<br /> | **[[5tfl]] - mCDH23 EC7-EC8<br /> | ||
**[[5vh2]] - mCDH23 EC12-EC13 (mutant)<br /> | **[[5vh2]] - mCDH23 EC12-EC13 (mutant)<br /> | ||
| - | **[[5wj8]] - hCDH23 EC13-EC14<br /> | ||
**[[5wjm]] - mCDH23 EC17-EC18<br /> | **[[5wjm]] - mCDH23 EC17-EC18<br /> | ||
**[[5tfk]] - mCDH23 EC19-EC21<br /> | **[[5tfk]] - mCDH23 EC19-EC21<br /> | ||
**[[5i8d]], [[5ulu]], [[5un2]] - mCDH23 EC19-EC21 (mutant)<br /> | **[[5i8d]], [[5ulu]], [[5un2]] - mCDH23 EC19-EC21 (mutant)<br /> | ||
| - | **[[5vvm]] - hCDH23 EC21-EC23<br /> | ||
**[[5uz8]] - mCDH23 EC22-EC24<br /> | **[[5uz8]] - mCDH23 EC22-EC24<br /> | ||
**[[5vt8]] - mCDH23 EC23-EC25<br /> | **[[5vt8]] - mCDH23 EC23-EC25<br /> | ||
**[[4apx]], [[4aq8]], [[4axw]], [[4xxw]] - mCDH23 EC1-EC2 + Prot-CDH15<br /> | **[[4apx]], [[4aq8]], [[4axw]], [[4xxw]] - mCDH23 EC1-EC2 + Prot-CDH15<br /> | ||
| - | **[[4aqa]], [[4aqe]] - mCDH23 EC1-EC2 (mutant) + Prot-CDH15 | + | **[[4aqa]], [[4aqe]] - mCDH23 EC1-EC2 (mutant) + Prot-CDH15<br /> |
| + | **[[5w4t]] - CDH23 EC1-EC3 - zebrafish<br /> | ||
* C-CDH “classical” | * C-CDH “classical” | ||
| Line 63: | Line 67: | ||
* E-CDH epithelial or CDH1 | * E-CDH epithelial or CDH1 | ||
| - | **[[1q1p]], [[1ff5]], [[1edh]], [[3lne]], [[3lnf]], [[3lng]], [[3lnh]], [[3lni]], [[2qvf]] – mE-CDH EC1-EC2<br /> | ||
| - | **[[3q2v]] – mE-CDH ectodomain<br /> | ||
**[[4zt1]], [[2o72]] – hE-CDH EC1-EC2<br /> | **[[4zt1]], [[2o72]] – hE-CDH EC1-EC2<br /> | ||
**[[4zte]] – hE-CDH EC1-EC2 + inhibitor<br /> | **[[4zte]] – hE-CDH EC1-EC2 + inhibitor<br /> | ||
**[[6fek]] – hE-CDH EC1-EC2 + antibody<br /> | **[[6fek]] – hE-CDH EC1-EC2 + antibody<br /> | ||
| + | **[[3ifq]] – hE-CDH EC1-EC3 <br /> | ||
| + | **[[3ff7]], [[3ff8]] - hE-CDH EC1-EC3+NK cell receptor<br /> | ||
| + | **[[2omt]], [[2omu]], [[2omx]], [[2omz]], [[2omv]], [[2omw]], [[2omy]] – hE-CDH EC1+internalin (mutant)<br /> | ||
| + | **[[1q1p]], [[1ff5]], [[1edh]], [[3lne]], [[3lnf]], [[3lng]], [[3lnh]], [[3lni]], [[2qvf]] – mE-CDH EC1-EC2<br /> | ||
| + | **[[3q2v]] – mE-CDH ectodomain<br /> | ||
**[[1edh]] - mE-CDH EC1-EC2+Ca<br /> | **[[1edh]] - mE-CDH EC1-EC2+Ca<br /> | ||
**[[3q2l]], [[3q2n]], [[3qrb]] - mE-CDH EC1-EC2 (mutant)<br /> | **[[3q2l]], [[3q2n]], [[3qrb]] - mE-CDH EC1-EC2 (mutant)<br /> | ||
| Line 73: | Line 80: | ||
**[[1i7x]], [[1i7w]] – mE-CDH cytoplasmic domain +catenin<br /> | **[[1i7x]], [[1i7w]] – mE-CDH cytoplasmic domain +catenin<br /> | ||
**[[4qd2]] – mE-CDH + botulinum neurotoxin<br /> | **[[4qd2]] – mE-CDH + botulinum neurotoxin<br /> | ||
| - | **[[3ifq]] – hE-CDH EC1-EC3 <br /> | ||
| - | **[[3ff7]], [[3ff8]] - hE-CDH EC1-EC3+NK cell receptor<br /> | ||
| - | **[[2omt]], [[2omu]], [[2omx]], [[2omz]], [[2omv]], [[2omw]], [[2omy]] – hE-CDH EC1+internalin (mutant)<br /> | ||
**[[1o6s]] – E-CDH N-terminal+internalin – ''Listeria monocytogenes''<br /> | **[[1o6s]] – E-CDH N-terminal+internalin – ''Listeria monocytogenes''<br /> | ||
| - | **[[4qd2]] – mE-CDH + botulinum neurotoxin<br /> | ||
*K-CDH kidney or CDH6 | *K-CDH kidney or CDH6 | ||
| Line 86: | Line 89: | ||
* T-CDH membrane bound | * T-CDH membrane bound | ||
| + | **[[2v37]] – hT-CDH N-terminal - NMR<br /> | ||
**[[3k5r]], [[6cg6]] – mT-CDH EC1-EC2<br /> | **[[3k5r]], [[6cg6]] – mT-CDH EC1-EC2<br /> | ||
| - | **[[3k5s]] - cT-CDH EC1-EC2 <br /> | ||
| - | **[[3k6d]] - XlT-CDH EC1 <br /> | ||
**[[3k6f]] - mT-CDH EC1<br /> | **[[3k6f]] - mT-CDH EC1<br /> | ||
| + | **[[3k5s]] - cT-CDH EC1-EC2 <br /> | ||
**[[3k6i]] - cT-CDH EC1<br /> | **[[3k6i]] - cT-CDH EC1<br /> | ||
| - | **[[ | + | **[[3k6d]] - XlT-CDH EC1 <br /> |
* N-CDH neuronal | * N-CDH neuronal | ||
| Line 108: | Line 111: | ||
*P-CDH placental or CDH3 | *P-CDH placental or CDH3 | ||
| - | **[[4nqq]] – mP-CDH EC1-EC2<br /> | ||
**[[4oy9]], [[4zml]], [[4zmn]], [[4zmq]], [[4zmt]], [[4zmw]], [[4zmz]] – hP-CDH EC1-EC2<br /> | **[[4oy9]], [[4zml]], [[4zmn]], [[4zmq]], [[4zmt]], [[4zmw]], [[4zmz]] – hP-CDH EC1-EC2<br /> | ||
**[[4zmo]], [[4zmp]], [[4zmv]], [[4zmx]], [[4zmy]] – hP-CDH EC1-EC2 (mutant)<br /> | **[[4zmo]], [[4zmp]], [[4zmv]], [[4zmx]], [[4zmy]] – hP-CDH EC1-EC2 (mutant)<br /> | ||
**[[5jyl]], [[5jym]] – hP-CDH EC1-EC2 + SCFV TSP7<br /> | **[[5jyl]], [[5jym]] – hP-CDH EC1-EC2 + SCFV TSP7<br /> | ||
| + | **[[4nqq]] – mP-CDH EC1-EC2<br /> | ||
*VE-CDH vascular epithelial | *VE-CDH vascular epithelial | ||
| Line 119: | Line 122: | ||
* Protocadherin | * Protocadherin | ||
| - | **[[6bx7]] - hProt-CDH1 EC1-EC4<br /> | + | **[[6bx7]], [[6vfp]] - hProt-CDH1 EC1-EC4<br /> |
**[[2yst]] – hProt-CDH7 EC3 – NMR<br /> | **[[2yst]] – hProt-CDH7 EC3 – NMR<br /> | ||
| + | **[[6mga]] - hProt-CDH1 EC4<br /> | ||
| + | **[[6pim]] - hProt-CDH1 EC3-EC4<br /> | ||
| + | **[[6n2e]] - hProt-CDH15 EC1-EC2 + mCDH23<br /> | ||
**[[2ee0]] - hProt-CDH9 Ca domain – NMR<br /> | **[[2ee0]] - hProt-CDH9 Ca domain – NMR<br /> | ||
**[[1wyj]] - mProt-CDH β 14 - NMR<br /> | **[[1wyj]] - mProt-CDH β 14 - NMR<br /> | ||
| Line 129: | Line 135: | ||
* Desmoglein | * Desmoglein | ||
| - | **[[2yqg]] – hDes-CDH2 EC1<br /> | + | **[[2yqg]] – hDes-CDH2 EC1 47-162<br /> |
| - | **[[5erd]] – hDes-CDH2 ectodomain<br /> | + | **[[5erd]] – hDes-CDH2 ectodomain 50-602<br /> |
**[[5eqx]] – hDes-CDH3 ectodomain<br /> | **[[5eqx]] – hDes-CDH3 ectodomain<br /> | ||
| + | **[[6sit]] – hDes2 EC2-EC3 149-386 + adenovirus fiber protein <br /> | ||
**[[6qnt]], [[6qnu]] – hDesmc2 ectodomain + adenovirus fiber protein – Cryo EM<br /> | **[[6qnt]], [[6qnu]] – hDesmc2 ectodomain + adenovirus fiber protein – Cryo EM<br /> | ||
Revision as of 06:14, 29 June 2020
3D Structures of Cadherin
Updated on 29-June-2020
