This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3bxo

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
-
[[Image:3bxo.jpg|left|200px]]
+
{{Seed}}
 +
[[Image:3bxo.png|left|200px]]
<!--
<!--
Line 9: Line 10:
{{STRUCTURE_3bxo| PDB=3bxo | SCENE= }}
{{STRUCTURE_3bxo| PDB=3bxo | SCENE= }}
-
'''Crystal Structure of Streptomyces venezuelae DesVI'''
+
===Crystal Structure of Streptomyces venezuelae DesVI===
-
==Overview==
+
<!--
-
d-Desosamine, or 3-(dimethylamino)-3,4,6-trideoxyglucose, is an unusual sugar found on the macrolide antibiotic erythromycin, and it has been shown to play a critical role in the biological activity of the drug. Desosamine is added to the parent aglycone via the action of a glycosyltransferase that utilizes dTDP-desosamine as its substrate. Six enzymes are required for the biosynthesis of dTDP-desosamine in Streptomyces venezuelae, with the last step catalyzed by DesVI, an N, N-dimethyltransferase. Here we describe the X-ray crystal structure determined to 2.0 A resolution of DesVI complexed with S-adenosylmethionine (SAM) and the substrate analogue UDP-benzene. Each subunit of the DesVI dimer contains a seven-stranded mixed beta-sheet flanked on either side by alpha-helices. In addition to this major tertiary structural element, there is a four-stranded antiparallel beta-sheet that provides the platform necessary for subunit-subunit assembly. On the basis of the UDP-benzene binding mode, the DesVI substrate, dTDP-3-(methylamino)-3,4,6-trideoxyglucose, has been modeled into the active site. This model places the C-6' methyl group of the sugar into a hydrophobic patch that is well-conserved among putative nucleotide-linked sugar dimethyltransferases. It is formed by Trp 140, Met 178, and Ile 200. The sugar C-2' hydroxyl sits near Tyr 14, and its C-3' amino group is properly positioned for direct in-line attack of the cofactor's reactive methyl group. While methyltransferases that catalyze single alkylations at carbons, oxygens, sulfurs, and nitrogens have been well characterized, little is known regarding enzymes capable of N,N-dimethylation reactions. As such, the ternary structure of DesVI reported here serves as a structural paradigm for a new family of dimethyltransferases that function on nucleotide-linked sugars.
+
The line below this paragraph, {{ABSTRACT_PUBMED_18327916}}, adds the Publication Abstract to the page
 +
(as it appears on PubMed at http://www.pubmed.gov), where 18327916 is the PubMed ID number.
 +
-->
 +
{{ABSTRACT_PUBMED_18327916}}
==About this Structure==
==About this Structure==
Line 31: Line 35:
[[Category: Sam]]
[[Category: Sam]]
[[Category: Sugar]]
[[Category: Sugar]]
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Wed Apr 9 14:46:04 2008''
+
 
 +
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Jul 27 23:19:25 2008''

Revision as of 20:19, 27 July 2008

Image:3bxo.png

Template:STRUCTURE 3bxo

Crystal Structure of Streptomyces venezuelae DesVI

Template:ABSTRACT PUBMED 18327916

About this Structure

3BXO is a Single protein structure of sequence from Streptomyces venezuelae. Full crystallographic information is available from OCA.

Reference

Three-Dimensional Structure of DesVI from Streptomyces venezuelae: A Sugar N,N-Dimethyltransferase Required for dTDP-Desosamine Biosynthesis., Burgie ES, Holden HM, Biochemistry. 2008 Apr 1;47(13):3982-8. Epub 2008 Mar 8. PMID:18327916

Page seeded by OCA on Sun Jul 27 23:19:25 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3bxo"
Personal tools