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2vh0
From Proteopedia
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<StructureSection load='2vh0' size='340' side='right'caption='[[2vh0]], [[Resolution|resolution]] 1.70Å' scene=''> | <StructureSection load='2vh0' size='340' side='right'caption='[[2vh0]], [[Resolution|resolution]] 1.70Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2vh0]] is a 2 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[2vh0]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VH0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VH0 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GSI:2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-(4-{2-[(DIMETHYLAMINO)METHYL]-1H-IMIDAZOL-1-YL}-2-FLUOROPHENYL)-2-OXOPYRROLIDIN-3-YL]ETHANESULFONAMIDE'>GSI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GSI:2-(5-CHLOROTHIOPHEN-2-YL)-N-[(3S)-1-(4-{2-[(DIMETHYLAMINO)METHYL]-1H-IMIDAZOL-1-YL}-2-FLUOROPHENYL)-2-OXOPYRROLIDIN-3-YL]ETHANESULFONAMIDE'>GSI</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2j34|2j34]], [[1wu1|1wu1]], [[2bq7|2bq7]], [[1ioe|1ioe]], [[1f0s|1f0s]], [[1nfw|1nfw]], [[1xka|1xka]], [[2gd4|2gd4]], [[1f0r|1f0r]], [[1msx|1msx]], [[1lpg|1lpg]], [[1p0s|1p0s]], [[2g00|2g00]], [[2bmg|2bmg]], [[1mq5|1mq5]], [[1iqn|1iqn]], [[1mq6|1mq6]], [[1xkb|1xkb]], [[2bqw|2bqw]], [[1iqm|1iqm]], [[1ezq|1ezq]], [[1iqe|1iqe]], [[1g2m|1g2m]], [[1fjs|1fjs]], [[1lpk|1lpk]], [[2j4i|2j4i]], [[1nfy|1nfy]], [[2uwl|2uwl]], [[2bok|2bok]], [[1nfx|1nfx]], [[1lpz|1lpz]], [[1hcg|1hcg]], [[2j94|2j94]], [[1iqj|1iqj]], [[1z6e|1z6e]], [[2uwp|2uwp]], [[2j95|2j95]], [[2cji|2cji]], [[2j38|2j38]], [[2boh|2boh]], [[1g2l|1g2l]], [[1nfu|1nfu]], [[1iqi|1iqi]], [[2bq6|2bq6]], [[1fax|1fax]], [[1iqf|1iqf]], [[1nl8|1nl8]], [[1kye|1kye]], [[1iqg|1iqg]], [[1iqk|1iqk]], [[1iqh|1iqh]], [[1v3x|1v3x]], [[1lqd|1lqd]], [[2fzz|2fzz]], [[2j2u|2j2u]], [[2uwo|2uwo]], [[1ksn|1ksn]], [[1c5m|1c5m]], [[1iql|1iql]]</td></tr> | + | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2j34|2j34]], [[1wu1|1wu1]], [[2bq7|2bq7]], [[1ioe|1ioe]], [[1f0s|1f0s]], [[1nfw|1nfw]], [[1xka|1xka]], [[2gd4|2gd4]], [[1f0r|1f0r]], [[1msx|1msx]], [[1lpg|1lpg]], [[1p0s|1p0s]], [[2g00|2g00]], [[2bmg|2bmg]], [[1mq5|1mq5]], [[1iqn|1iqn]], [[1mq6|1mq6]], [[1xkb|1xkb]], [[2bqw|2bqw]], [[1iqm|1iqm]], [[1ezq|1ezq]], [[1iqe|1iqe]], [[1g2m|1g2m]], [[1fjs|1fjs]], [[1lpk|1lpk]], [[2j4i|2j4i]], [[1nfy|1nfy]], [[2uwl|2uwl]], [[2bok|2bok]], [[1nfx|1nfx]], [[1lpz|1lpz]], [[1hcg|1hcg]], [[2j94|2j94]], [[1iqj|1iqj]], [[1z6e|1z6e]], [[2uwp|2uwp]], [[2j95|2j95]], [[2cji|2cji]], [[2j38|2j38]], [[2boh|2boh]], [[1g2l|1g2l]], [[1nfu|1nfu]], [[1iqi|1iqi]], [[2bq6|2bq6]], [[1fax|1fax]], [[1iqf|1iqf]], [[1nl8|1nl8]], [[1kye|1kye]], [[1iqg|1iqg]], [[1iqk|1iqk]], [[1iqh|1iqh]], [[1v3x|1v3x]], [[1lqd|1lqd]], [[2fzz|2fzz]], [[2j2u|2j2u]], [[2uwo|2uwo]], [[1ksn|1ksn]], [[1c5m|1c5m]], [[1iql|1iql]]</div></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Coagulation_factor_Xa Coagulation factor Xa], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.21.6 3.4.21.6] </span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vh0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vh0 OCA], [https://pdbe.org/2vh0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vh0 RCSB], [https://www.ebi.ac.uk/pdbsum/2vh0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vh0 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Disease == | == Disease == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Defects in F10 are the cause of factor X deficiency (FA10D) [MIM:[https://omim.org/entry/227600 227600]]. A hemorrhagic disease with variable presentation. Affected individuals can manifest prolonged nasal and mucosal hemorrhage, menorrhagia, hematuria, and occasionally hemarthrosis. Some patients do not have clinical bleeding diathesis.<ref>PMID:2790181</ref> <ref>PMID:1973167</ref> <ref>PMID:1985698</ref> <ref>PMID:7669671</ref> <ref>PMID:8529633</ref> <ref>PMID:7860069</ref> <ref>PMID:8845463</ref> <ref>PMID:8910490</ref> <ref>PMID:10468877</ref> <ref>PMID:10746568</ref> <ref>PMID:10739379</ref> <ref>PMID:11248282</ref> <ref>PMID:11728527</ref> <ref>PMID:12945883</ref> <ref>PMID:15650540</ref> <ref>PMID:17393015</ref> <ref>PMID:19135706</ref> |
== Function == | == Function == | ||
| - | [[ | + | [[https://www.uniprot.org/uniprot/FA10_HUMAN FA10_HUMAN]] Factor Xa is a vitamin K-dependent glycoprotein that converts prothrombin to thrombin in the presence of factor Va, calcium and phospholipid during blood clotting. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
Revision as of 10:45, 7 July 2021
Structure and property based design of factor Xa inhibitors:biaryl pyrrolidin-2-ones incorporating basic heterocyclic motifs
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Categories: Coagulation factor Xa | Homo sapiens | Large Structures | Borthwick, A D | Brown, D | Burns-Kurtis, C L | Campbell, M | Chan, C | Charbaut, M | Convery, M A | Diallo, H | Hortense, E | Irving, W R | Kelly, H A | King, N P | Kleanthous, S | Mason, A M | Pateman, A J | Patikis, A | Pinto, I L | Pollard, D R | Senger, S | Shah, G P | Toomey, J R | Watson, N S | Weston, H E | Young, R J | Zhou, P | Blood coagulation | Calcium | Cleavage on pair of basic residue | Complex | Egf-like domain | Gamma-carboxyglutamic acid | Glycoprotein | Hydrolase | Hydroxylation | Polymorphism | Protease | Serine protease | Zymogen
