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| ==NMR structure of the C-terminal domain of the Bacteriophage T5 decoration protein pb10.== | | ==NMR structure of the C-terminal domain of the Bacteriophage T5 decoration protein pb10.== |
- | <StructureSection load='5lxk' size='340' side='right'caption='[[5lxk]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='5lxk' size='340' side='right'caption='[[5lxk]]' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[5lxk]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt5 Bpt5]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5LXK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5lxk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T5 Escherichia virus T5]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5LXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5LXK FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">N5, T5.151, T5p147 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10726 BPT5])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5lxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lxk OCA], [http://pdbe.org/5lxk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5lxk RCSB], [http://www.ebi.ac.uk/pdbsum/5lxk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5lxk ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5lxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5lxk OCA], [https://pdbe.org/5lxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5lxk RCSB], [https://www.ebi.ac.uk/pdbsum/5lxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5lxk ProSAT]</span></td></tr> |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/DECO_BPT5 DECO_BPT5]] Decoration protein that binds to each capsid protein hexamer after capsid expansion.<ref>PMID:16876823</ref> <ref>PMID:26616586</ref> | + | [https://www.uniprot.org/uniprot/DECO_BPT5 DECO_BPT5] Decoration protein that binds to each capsid protein hexamer after capsid expansion.<ref>PMID:16876823</ref> <ref>PMID:26616586</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Bpt5]] | + | [[Category: Escherichia virus T5]] |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Boulanger, P]] | + | [[Category: Boulanger P]] |
- | [[Category: Cuniasse, P]] | + | [[Category: Cuniasse P]] |
- | [[Category: Gilquin, B]] | + | [[Category: Gilquin B]] |
- | [[Category: Vernhes, E]] | + | [[Category: Vernhes E]] |
- | [[Category: Zinn-Justin, S]] | + | [[Category: Zinn-Justin S]] |
- | [[Category: Bacteriophage t5 decoration protein]]
| + | |
- | [[Category: Viral protein]]
| + | |
| Structural highlights
Function
DECO_BPT5 Decoration protein that binds to each capsid protein hexamer after capsid expansion.[1] [2]
Publication Abstract from PubMed
Bacteriophage capsids constitute icosahedral shells of exceptional stability that protect the viral genome. Many capsids display on their surface decoration proteins whose structure and function remain largely unknown. The decoration protein pb10 of phage T5 binds at the centre of the 120 hexamers formed by the major capsid protein. Here we determined the 3D structure of pb10 and investigated its capsid-binding properties using NMR, SAXS, cryoEM and SPR. Pb10 consists of an alpha-helical capsid-binding domain and an Ig-like domain exposed to the solvent. It binds to the T5 capsid with a remarkably high affinity and its binding kinetics is characterized by a very slow dissociation rate. We propose that the conformational exchange events observed in the capsid-binding domain enable rearrangements upon binding that contribute to the quasi-irreversibility of the pb10-capsid interaction. Moreover we show that pb10 binding is a highly cooperative process, which favours immediate rebinding of newly dissociated pb10 to the 120 hexamers of the capsid protein. In extreme conditions, pb10 protects the phage from releasing its genome. We conclude that pb10 may function to reinforce the capsid thus favouring phage survival in harsh environments.
High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid.,Vernhes E, Renouard M, Gilquin B, Cuniasse P, Durand D, England P, Hoos S, Huet A, Conway JF, Glukhov A, Ksenzenko V, Jacquet E, Nhiri N, Zinn-Justin S, Boulanger P Sci Rep. 2017 Feb 6;7:41662. doi: 10.1038/srep41662. PMID:28165000[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Effantin G, Boulanger P, Neumann E, Letellier L, Conway JF. Bacteriophage T5 structure reveals similarities with HK97 and T4 suggesting evolutionary relationships. J Mol Biol. 2006 Sep 1;361(5):993-1002. Epub 2006 Jul 31. PMID:16876823 doi:http://dx.doi.org/10.1016/j.jmb.2006.06.081
- ↑ Huet A, Duda RL, Hendrix RW, Boulanger P, Conway JF. Correct Assembly of the Bacteriophage T5 Procapsid Requires Both the Maturation Protease and the Portal Complex. J Mol Biol. 2016 Jan 16;428(1):165-81. doi: 10.1016/j.jmb.2015.11.019. Epub 2015 , Nov 23. PMID:26616586 doi:http://dx.doi.org/10.1016/j.jmb.2015.11.019
- ↑ Vernhes E, Renouard M, Gilquin B, Cuniasse P, Durand D, England P, Hoos S, Huet A, Conway JF, Glukhov A, Ksenzenko V, Jacquet E, Nhiri N, Zinn-Justin S, Boulanger P. High affinity anchoring of the decoration protein pb10 onto the bacteriophage T5 capsid. Sci Rep. 2017 Feb 6;7:41662. doi: 10.1038/srep41662. PMID:28165000 doi:http://dx.doi.org/10.1038/srep41662
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