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6gt7

From Proteopedia

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Current revision

NMR structure of the free helix bundle domain from the functional pRN1 primase

Structural highlights

6gt7 is a 1 chain structure with sequence from Sulfolobus islandicus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

Q54324_SULIS

Publication Abstract from PubMed

Primases have a fundamental role in DNA replication. They synthesize a primer that is then extended by DNA polymerases. Archaeoeukaryotic primases require for synthesis a catalytic and an accessory domain, the exact contribution of the latter being unresolved. For the pRN1 archaeal primase, this domain is a 115-amino acid helix bundle domain (HBD). Our structural investigations of this small HBD by liquid- and solid-state nuclear magnetic resonance (NMR) revealed that only the HBD binds the DNA template. DNA binding becomes sequence-specific after a major allosteric change in the HBD, triggered by the binding of two nucleotide triphosphates. The spatial proximity of the two nucleotides and the DNA template in the quaternary structure of the HBD strongly suggests that this small domain brings together the substrates to prepare the first catalytic step of primer synthesis. This efficient mechanism is likely general for all archaeoeukaryotic primases.

A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template.,Boudet J, Devillier JC, Wiegand T, Salmon L, Meier BH, Lipps G, Allain FH Cell. 2018 Dec 18. pii: S0092-8674(18)31556-3. doi: 10.1016/j.cell.2018.11.031. PMID:30595448^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Boudet J, Devillier JC, Wiegand T, Salmon L, Meier BH, Lipps G, Allain FH. A Small Helical Bundle Prepares Primer Synthesis by Binding Two Nucleotides that Enhance Sequence-Specific Recognition of the DNA Template. Cell. 2018 Dec 18. pii: S0092-8674(18)31556-3. doi: 10.1016/j.cell.2018.11.031. PMID:30595448 doi:http://dx.doi.org/10.1016/j.cell.2018.11.031

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/6gt7"

Categories: Large Structures | Sulfolobus islandicus | Allain F | Boudet J | Lipps G

@@ Line 1: / Line 1: @@
 ==NMR structure of the free helix bundle domain from the functional pRN1 primase==
-<StructureSection load='6gt7' size='340' side='right'caption='[[6gt7]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='6gt7' size='340' side='right'caption='[[6gt7]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[6gt7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"sulfolobus_islandicus"_zillig_et_al._1994 "sulfolobus islandicus" zillig et al. 1994]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GT7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GT7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[6gt7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_islandicus Sulfolobus islandicus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GT7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6GT7 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gt7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gt7 OCA], [http://pdbe.org/6gt7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gt7 RCSB], [http://www.ebi.ac.uk/pdbsum/6gt7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gt7 ProSAT]</span></td></tr>
+</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6gt7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gt7 OCA], [https://pdbe.org/6gt7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6gt7 RCSB], [https://www.ebi.ac.uk/pdbsum/6gt7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6gt7 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/Q54324_SULIS Q54324_SULIS]
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 15: / Line 17: @@
 </div>
 <div class="pdbe-citations 6gt7" style="background-color:#fffaf0;"></div>
+==See Also==
+*[[RNA polymerase 3D structures|RNA polymerase 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Sulfolobus islandicus zillig et al. 1994]]
 [[Category: Large Structures]]
-[[Category: Allain, F]]
+[[Category: Sulfolobus islandicus]]
-[[Category: Boudet, J]]
+[[Category: Allain F]]
-[[Category: Lipps, G]]
+[[Category: Boudet J]]
-[[Category: Dinucleotide formation]]
+[[Category: Lipps G]]
-[[Category: Functional prn1 primase]]
-[[Category: Replication initiation]]
-[[Category: Transferase]]
-[[Category: Unusual archaeo-eukaryotic primase]]

6gt7

From Proteopedia

Current revision

NMR structure of the free helix bundle domain from the functional pRN1 primase

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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